Cluster: Rep_223_CGC56
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 6
- Substrate:
- Genome ID: Rep_223
- CGC Family ID: CGCFAM_01077
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_223_c_270 | Rep_223_c_270_1 | 37 | 2262 | - | GH3 |
| NULL(UNKNOWN) | Rep_223_c_270 | Rep_223_c_270_2 | 2338 | 2463 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_223_c_270 | Rep_223_c_270_3 | 2501 | 3883 | - | GH16_3 |
| NULL(UNKNOWN) | Rep_223_c_270 | Rep_223_c_270_4 | 3959 | 5323 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_223_c_270 | Rep_223_c_270_5 | 5343 | 6953 | - | SusD_RagB | SusD-like_2 | SusD-like_3 |
| TC | Rep_223_c_270 | Rep_223_c_270_6 | 6975 | 10166 | - | 1.B.14.6.1 |
| TF | Rep_223_c_270 | Rep_223_c_270_7 | 11091 | 13931 | - | GerE |
| CAZyme | Rep_223_c_270 | Rep_223_c_270_8 | 14179 | 15135 | + | GH18 |
| TC | Rep_223_c_270 | Rep_223_c_270_9 | 15372 | 18458 | + | 1.B.14.6.1 |
| pfam | Rep_223_c_270 | Rep_223_c_270_10 | 18476 | 20125 | + | SusD_RagB | SusD-like_3 |
| NULL(UNKNOWN) | Rep_223_c_270 | Rep_223_c_270_11 | 20158 | 20703 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_223_c_270 | Rep_223_c_270_12 | 20711 | 23026 | + | GH88 | PL38 |
| CAZyme | Rep_223_c_270 | Rep_223_c_270_13 | 23265 | 25835 | + | CBM57 | GH2 |
| CAZyme | Rep_223_c_270 | Rep_223_c_270_14 | 25832 | 28198 | + | GH2 |
Gene ID: Rep_223_c_270_1
Type: CAZyme
Location: 37 - 2262 (-)
Type: CAZyme
Location: 37 - 2262 (-)
Gene ID: Rep_223_c_270_2
Type:
Location: 2338 - 2463 (-)
Type:
Location: 2338 - 2463 (-)
Gene ID: Rep_223_c_270_3
Type: CAZyme
Location: 2501 - 3883 (-)
Type: CAZyme
Location: 2501 - 3883 (-)
Gene ID: Rep_223_c_270_4
Type:
Location: 3959 - 5323 (-)
Type:
Location: 3959 - 5323 (-)
Gene ID: Rep_223_c_270_5
Type: pfam
Location: 5343 - 6953 (-)
Type: pfam
Location: 5343 - 6953 (-)
Gene ID: Rep_223_c_270_6
Type: TC
Location: 6975 - 10166 (-)
Type: TC
Location: 6975 - 10166 (-)
Gene ID: Rep_223_c_270_7
Type: TF
Location: 11091 - 13931 (-)
Type: TF
Location: 11091 - 13931 (-)
Gene ID: Rep_223_c_270_8
Type: CAZyme
Location: 14179 - 15135 (+)
Type: CAZyme
Location: 14179 - 15135 (+)
Gene ID: Rep_223_c_270_9
Type: TC
Location: 15372 - 18458 (+)
Type: TC
Location: 15372 - 18458 (+)
Gene ID: Rep_223_c_270_10
Type: pfam
Location: 18476 - 20125 (+)
Type: pfam
Location: 18476 - 20125 (+)
Gene ID: Rep_223_c_270_11
Type:
Location: 20158 - 20703 (+)
Type:
Location: 20158 - 20703 (+)
Gene ID: Rep_223_c_270_12
Type: CAZyme
Location: 20711 - 23026 (+)
Type: CAZyme
Location: 20711 - 23026 (+)
Gene ID: Rep_223_c_270_13
Type: CAZyme
Location: 23265 - 25835 (+)
Type: CAZyme
Location: 23265 - 25835 (+)
Gene ID: Rep_223_c_270_14
Type: CAZyme
Location: 25832 - 28198 (+)
Type: CAZyme
Location: 25832 - 28198 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.