Cluster: Rep_223_CGC54
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 7
- Substrate:
- Genome ID: Rep_223
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_223_c_268 | Rep_223_c_268_8 | 7498 | 8481 | + | 8.A.5.1.3 |
| pfam | Rep_223_c_268 | Rep_223_c_268_9 | 8769 | 10118 | + | AAA_14 | DUF4143 |
| pfam | Rep_223_c_268 | Rep_223_c_268_10 | 10334 | 10714 | + | Desulfoferrodox | Desulfoferrod_N |
| CAZyme | Rep_223_c_268 | Rep_223_c_268_11 | 10785 | 11777 | - | GH43_17 |
| CAZyme | Rep_223_c_268 | Rep_223_c_268_12 | 11848 | 14505 | - | GH39 | GH43_19 |
| pfam | Rep_223_c_268 | Rep_223_c_268_13 | 14520 | 15032 | - | GH97_N |
| pfam | Rep_223_c_268 | Rep_223_c_268_14 | 15048 | 16355 | - | DUF362 |
| CAZyme | Rep_223_c_268 | Rep_223_c_268_15 | 16382 | 18292 | - | GH43_19 | GH43_29 |
| CAZyme | Rep_223_c_268 | Rep_223_c_268_16 | 18576 | 20450 | - | PL33_1 |
| CAZyme | Rep_223_c_268 | Rep_223_c_268_17 | 20526 | 21800 | - | GH154 |
| CAZyme | Rep_223_c_268 | Rep_223_c_268_18 | 22024 | 23142 | - | GH43_24 |
| TC | Rep_223_c_268 | Rep_223_c_268_19 | 23265 | 24971 | - | 8.A.46.1.6 |
| TC | Rep_223_c_268 | Rep_223_c_268_20 | 24993 | 28052 | - | 1.B.14.6.1 |
| TC | Rep_223_c_268 | Rep_223_c_268_21 | 28468 | 29772 | - | 2.A.66.1.2 |
| CAZyme | Rep_223_c_268 | Rep_223_c_268_22 | 30495 | 31622 | - | GH105 |
Gene ID: Rep_223_c_268_8
Type: TC
Location: 7498 - 8481 (+)
Type: TC
Location: 7498 - 8481 (+)
Gene ID: Rep_223_c_268_9
Type: pfam
Location: 8769 - 10118 (+)
Type: pfam
Location: 8769 - 10118 (+)
Gene ID: Rep_223_c_268_10
Type: pfam
Location: 10334 - 10714 (+)
Type: pfam
Location: 10334 - 10714 (+)
Gene ID: Rep_223_c_268_11
Type: CAZyme
Location: 10785 - 11777 (-)
Type: CAZyme
Location: 10785 - 11777 (-)
Gene ID: Rep_223_c_268_12
Type: CAZyme
Location: 11848 - 14505 (-)
Type: CAZyme
Location: 11848 - 14505 (-)
Gene ID: Rep_223_c_268_13
Type: pfam
Location: 14520 - 15032 (-)
Type: pfam
Location: 14520 - 15032 (-)
Gene ID: Rep_223_c_268_14
Type: pfam
Location: 15048 - 16355 (-)
Type: pfam
Location: 15048 - 16355 (-)
Gene ID: Rep_223_c_268_15
Type: CAZyme
Location: 16382 - 18292 (-)
Type: CAZyme
Location: 16382 - 18292 (-)
Gene ID: Rep_223_c_268_16
Type: CAZyme
Location: 18576 - 20450 (-)
Type: CAZyme
Location: 18576 - 20450 (-)
Gene ID: Rep_223_c_268_17
Type: CAZyme
Location: 20526 - 21800 (-)
Type: CAZyme
Location: 20526 - 21800 (-)
Gene ID: Rep_223_c_268_18
Type: CAZyme
Location: 22024 - 23142 (-)
Type: CAZyme
Location: 22024 - 23142 (-)
Gene ID: Rep_223_c_268_19
Type: TC
Location: 23265 - 24971 (-)
Type: TC
Location: 23265 - 24971 (-)
Gene ID: Rep_223_c_268_20
Type: TC
Location: 24993 - 28052 (-)
Type: TC
Location: 24993 - 28052 (-)
Gene ID: Rep_223_c_268_21
Type: TC
Location: 28468 - 29772 (-)
Type: TC
Location: 28468 - 29772 (-)
Gene ID: Rep_223_c_268_22
Type: CAZyme
Location: 30495 - 31622 (-)
Type: CAZyme
Location: 30495 - 31622 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.