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Cluster: Rep_223_CGC50

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_223_c_260 Rep_223_c_260_1 473 1702 - GH88
CAZyme Rep_223_c_260 Rep_223_c_260_2 1729 3369 - CBM91 | GH43_10
CAZyme Rep_223_c_260 Rep_223_c_260_3 3750 6089 + PL40 | PL40
CAZyme Rep_223_c_260 Rep_223_c_260_4 6105 8012 + GH97
TC Rep_223_c_260 Rep_223_c_260_5 8056 9240 + 2.A.1.7.16
NULL(UNKNOWN) Rep_223_c_260 Rep_223_c_260_6 9243 10637 + NULL(UNKNOWN)
[View Structural Homologs]
TF Rep_223_c_260 Rep_223_c_260_7 10805 13600 + HTH_AraC
CAZyme Rep_223_c_260 Rep_223_c_260_8 13732 15672 + GH146
Gene ID: Rep_223_c_260_1
Type: CAZyme
Location: 473 - 1702 (-)
Gene ID: Rep_223_c_260_2
Type: CAZyme
Location: 1729 - 3369 (-)
Gene ID: Rep_223_c_260_3
Type: CAZyme
Location: 3750 - 6089 (+)
Gene ID: Rep_223_c_260_4
Type: CAZyme
Location: 6105 - 8012 (+)
Gene ID: Rep_223_c_260_5
Type: TC
Location: 8056 - 9240 (+)
Gene ID: Rep_223_c_260_6
Type:
Location: 9243 - 10637 (+)
Gene ID: Rep_223_c_260_7
Type: TF
Location: 10805 - 13600 (+)
Gene ID: Rep_223_c_260_8
Type: CAZyme
Location: 13732 - 15672 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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