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Cluster: Rep_223_CGC49

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_223_c_259 Rep_223_c_259_2 573 2921 - GH3
TC Rep_223_c_259 Rep_223_c_259_3 3074 3778 - 3.A.1.124.4
pfam Rep_223_c_259 Rep_223_c_259_4 3803 5188 - DUF5687
CAZyme Rep_223_c_259 Rep_223_c_259_5 5359 6321 - GH43_1
CAZyme Rep_223_c_259 Rep_223_c_259_6 6345 7451 - GH10
TC Rep_223_c_259 Rep_223_c_259_7 7468 8880 - 2.A.2.3.2
pfam Rep_223_c_259 Rep_223_c_259_8 8935 10125 - Lipase_GDSL | Lipase_GDSL_2
TF Rep_223_c_259 Rep_223_c_259_9 10609 14529 + HTH_AraC
CAZyme Rep_223_c_259 Rep_223_c_259_10 14622 16568 + GH67
CAZyme Rep_223_c_259 Rep_223_c_259_11 16602 18257 + GH35
TC Rep_223_c_259 Rep_223_c_259_12 18499 21603 + 1.B.14.6.1
Gene ID: Rep_223_c_259_2
Type: CAZyme
Location: 573 - 2921 (-)
Gene ID: Rep_223_c_259_3
Type: TC
Location: 3074 - 3778 (-)
Gene ID: Rep_223_c_259_4
Type: pfam
Location: 3803 - 5188 (-)
Gene ID: Rep_223_c_259_5
Type: CAZyme
Location: 5359 - 6321 (-)
Gene ID: Rep_223_c_259_6
Type: CAZyme
Location: 6345 - 7451 (-)
Gene ID: Rep_223_c_259_7
Type: TC
Location: 7468 - 8880 (-)
Gene ID: Rep_223_c_259_8
Type: pfam
Location: 8935 - 10125 (-)
Gene ID: Rep_223_c_259_9
Type: TF
Location: 10609 - 14529 (+)
Gene ID: Rep_223_c_259_10
Type: CAZyme
Location: 14622 - 16568 (+)
Gene ID: Rep_223_c_259_11
Type: CAZyme
Location: 16602 - 18257 (+)
Gene ID: Rep_223_c_259_12
Type: TC
Location: 18499 - 21603 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_223_c_259_3 vegetarian > omnivore 1.00730 0.02426

🧭 Explore Read Mapping of CGC

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