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Cluster: Rep_223_CGC48

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_223_c_257 Rep_223_c_257_1 239 2116 + 3.A.3.6.5
TC Rep_223_c_257 Rep_223_c_257_2 2233 2976 + 1.A.14.2.2
CAZyme Rep_223_c_257 Rep_223_c_257_3 3063 6458 - GH92
STP Rep_223_c_257 Rep_223_c_257_4 6502 7839 - ATPase_2
pfam Rep_223_c_257 Rep_223_c_257_5 8226 9584 + AAA_14 | DUF4143
CAZyme Rep_223_c_257 Rep_223_c_257_6 9581 12172 - GH92
CAZyme Rep_223_c_257 Rep_223_c_257_7 12180 14999 - GH28
pfam Rep_223_c_257 Rep_223_c_257_8 15083 16717 - SusD_RagB | SusD-like_3
TC Rep_223_c_257 Rep_223_c_257_9 16736 19744 - 1.B.14.6.1
CAZyme Rep_223_c_257 Rep_223_c_257_10 19822 21201 - GH28
Gene ID: Rep_223_c_257_1
Type: TC
Location: 239 - 2116 (+)
Gene ID: Rep_223_c_257_2
Type: TC
Location: 2233 - 2976 (+)
Gene ID: Rep_223_c_257_3
Type: CAZyme
Location: 3063 - 6458 (-)
Gene ID: Rep_223_c_257_4
Type: STP
Location: 6502 - 7839 (-)
Gene ID: Rep_223_c_257_5
Type: pfam
Location: 8226 - 9584 (+)
Gene ID: Rep_223_c_257_6
Type: CAZyme
Location: 9581 - 12172 (-)
Gene ID: Rep_223_c_257_7
Type: CAZyme
Location: 12180 - 14999 (-)
Gene ID: Rep_223_c_257_8
Type: pfam
Location: 15083 - 16717 (-)
Gene ID: Rep_223_c_257_9
Type: TC
Location: 16736 - 19744 (-)
Gene ID: Rep_223_c_257_10
Type: CAZyme
Location: 19822 - 21201 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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