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Cluster: Rep_223_CGC42

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_223_c_228 Rep_223_c_228_3 2664 4802 + 2.A.37.2.5
pfam Rep_223_c_228 Rep_223_c_228_4 4838 5353 + Ferritin
TC Rep_223_c_228 Rep_223_c_228_5 5436 6143 + 3.A.1.125.1
pfam Rep_223_c_228 Rep_223_c_228_6 6127 6963 + S1_2 | CvfB_WH
TF Rep_223_c_228 Rep_223_c_228_7 7032 10925 - HTH_AraC
CAZyme Rep_223_c_228 Rep_223_c_228_8 10977 12512 - GH136
TC Rep_223_c_228 Rep_223_c_228_9 12565 14151 - 8.A.46.1.5
TC Rep_223_c_228 Rep_223_c_228_10 14168 17260 - 1.B.14.6.1
Gene ID: Rep_223_c_228_3
Type: TC
Location: 2664 - 4802 (+)
Gene ID: Rep_223_c_228_4
Type: pfam
Location: 4838 - 5353 (+)
Gene ID: Rep_223_c_228_5
Type: TC
Location: 5436 - 6143 (+)
Gene ID: Rep_223_c_228_6
Type: pfam
Location: 6127 - 6963 (+)
Gene ID: Rep_223_c_228_7
Type: TF
Location: 7032 - 10925 (-)
Gene ID: Rep_223_c_228_8
Type: CAZyme
Location: 10977 - 12512 (-)
Gene ID: Rep_223_c_228_9
Type: TC
Location: 12565 - 14151 (-)
Gene ID: Rep_223_c_228_10
Type: TC
Location: 14168 - 17260 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_223_c_228_5 vegetarian > omnivore 1.29670 0.02426
Rep_223_c_228_5 vegetarian > vegan 2.82515 0.01287
Rep_223_c_228_6 vegetarian > vegan 1.02888 0.01287

🧭 Explore Read Mapping of CGC

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