Cluster: Rep_223_CGC35
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_223
- CGC Family ID: CGCFAM_00474
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_223_c_185 | Rep_223_c_185_8 | 6580 | 7920 | + | CBM50 |
| pfam | Rep_223_c_185 | Rep_223_c_185_9 | 7945 | 8706 | + | OMP_b-brl_2 |
| TC | Rep_223_c_185 | Rep_223_c_185_10 | 8706 | 10121 | + | 2.A.1.53.5 |
| NULL(UNKNOWN) | Rep_223_c_185 | Rep_223_c_185_11 | 10151 | 10825 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | Rep_223_c_185 | Rep_223_c_185_12 | 10894 | 11769 | - | Sigma70_r2 | Sigma70_r3 | Sigma70_r4 |
| TC | Rep_223_c_185 | Rep_223_c_185_13 | 12019 | 13533 | + | 2.A.17.1.6 |
Gene ID: Rep_223_c_185_8
Type: CAZyme
Location: 6580 - 7920 (+)
Type: CAZyme
Location: 6580 - 7920 (+)
Gene ID: Rep_223_c_185_9
Type: pfam
Location: 7945 - 8706 (+)
Type: pfam
Location: 7945 - 8706 (+)
Gene ID: Rep_223_c_185_10
Type: TC
Location: 8706 - 10121 (+)
Type: TC
Location: 8706 - 10121 (+)
Gene ID: Rep_223_c_185_11
Type:
Location: 10151 - 10825 (+)
Type:
Location: 10151 - 10825 (+)
Gene ID: Rep_223_c_185_12
Type: STP
Location: 10894 - 11769 (-)
Type: STP
Location: 10894 - 11769 (-)
Gene ID: Rep_223_c_185_13
Type: TC
Location: 12019 - 13533 (+)
Type: TC
Location: 12019 - 13533 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.