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Cluster: Rep_223_CGC33

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_223_c_177 Rep_223_c_177_2 2229 5336 + 1.B.14.6.1
pfam Rep_223_c_177 Rep_223_c_177_3 5364 7157 + SusD_RagB | SusD-like_3
TC Rep_223_c_177 Rep_223_c_177_4 7179 10412 + 1.B.14.6.1
pfam Rep_223_c_177 Rep_223_c_177_5 10457 12256 + SusD_RagB | SusD-like_3
NULL(UNKNOWN) Rep_223_c_177 Rep_223_c_177_6 12371 12841 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_223_c_177 Rep_223_c_177_7 12862 14628 + GH43_4
CAZyme Rep_223_c_177 Rep_223_c_177_8 14645 15643 + GH43_5
pfam Rep_223_c_177 Rep_223_c_177_9 15861 16622 + DUF5020
TC Rep_223_c_177 Rep_223_c_177_10 16748 18337 - 3.D.10.1.4
pfam Rep_223_c_177 Rep_223_c_177_11 18516 18926 + bPH_4
peptidase Rep_223_c_177 Rep_223_c_177_12 18929 20281 + S13.UPW
TC Rep_223_c_177 Rep_223_c_177_13 20317 21573 + 1.A.23.4.5
STP Rep_223_c_177 Rep_223_c_177_14 21578 22642 + HhH-GPD
pfam Rep_223_c_177 Rep_223_c_177_15 22666 25977 - TPR_8 | TPR_8 | TPR_10 | TPR_16 | DUF5107
TC Rep_223_c_177 Rep_223_c_177_16 26045 27430 - 2.A.1.1.55
Gene ID: Rep_223_c_177_2
Type: TC
Location: 2229 - 5336 (+)
Gene ID: Rep_223_c_177_3
Type: pfam
Location: 5364 - 7157 (+)
Gene ID: Rep_223_c_177_4
Type: TC
Location: 7179 - 10412 (+)
Gene ID: Rep_223_c_177_5
Type: pfam
Location: 10457 - 12256 (+)
Gene ID: Rep_223_c_177_6
Type:
Location: 12371 - 12841 (+)
Gene ID: Rep_223_c_177_7
Type: CAZyme
Location: 12862 - 14628 (+)
Gene ID: Rep_223_c_177_8
Type: CAZyme
Location: 14645 - 15643 (+)
Gene ID: Rep_223_c_177_9
Type: pfam
Location: 15861 - 16622 (+)
Gene ID: Rep_223_c_177_10
Type: TC
Location: 16748 - 18337 (-)
Gene ID: Rep_223_c_177_11
Type: pfam
Location: 18516 - 18926 (+)
Gene ID: Rep_223_c_177_12
Type: peptidase
Location: 18929 - 20281 (+)
Gene ID: Rep_223_c_177_13
Type: TC
Location: 20317 - 21573 (+)
Gene ID: Rep_223_c_177_14
Type: STP
Location: 21578 - 22642 (+)
Gene ID: Rep_223_c_177_15
Type: pfam
Location: 22666 - 25977 (-)
Gene ID: Rep_223_c_177_16
Type: TC
Location: 26045 - 27430 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_223_c_177_8 vegetarian > omnivore 1.07999 0.02426

🧭 Explore Read Mapping of CGC

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