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Cluster: Rep_223_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_223_c_137 Rep_223_c_137_5 4380 5825 - GH28
CAZyme Rep_223_c_137 Rep_223_c_137_6 5863 8913 - GH2
pfam Rep_223_c_137 Rep_223_c_137_7 8907 10928 - SusD_RagB | SusD-like_3
TC Rep_223_c_137 Rep_223_c_137_8 10951 14244 - 1.B.14.6.1
CAZyme Rep_223_c_137 Rep_223_c_137_9 14266 15477 - CBM32
STP Rep_223_c_137 Rep_223_c_137_10 15497 16006 - Sigma70_r2 | Sigma70_r4_2
TF Rep_223_c_137 Rep_223_c_137_11 16180 19014 - HTH_AraC
CAZyme Rep_223_c_137 Rep_223_c_137_12 19186 21063 - GH97
CAZyme Rep_223_c_137 Rep_223_c_137_13 21069 23396 - PL40
Gene ID: Rep_223_c_137_5
Type: CAZyme
Location: 4380 - 5825 (-)
Gene ID: Rep_223_c_137_6
Type: CAZyme
Location: 5863 - 8913 (-)
Gene ID: Rep_223_c_137_7
Type: pfam
Location: 8907 - 10928 (-)
Gene ID: Rep_223_c_137_8
Type: TC
Location: 10951 - 14244 (-)
Gene ID: Rep_223_c_137_9
Type: CAZyme
Location: 14266 - 15477 (-)
Gene ID: Rep_223_c_137_10
Type: STP
Location: 15497 - 16006 (-)
Gene ID: Rep_223_c_137_11
Type: TF
Location: 16180 - 19014 (-)
Gene ID: Rep_223_c_137_12
Type: CAZyme
Location: 19186 - 21063 (-)
Gene ID: Rep_223_c_137_13
Type: CAZyme
Location: 21069 - 23396 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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