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Cluster: Rep_223_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_223_c_4 Rep_223_c_4_1 42 1022 - GT2
pfam Rep_223_c_4 Rep_223_c_4_2 1067 2560 + Polysacc_synt
NULL(UNKNOWN) Rep_223_c_4 Rep_223_c_4_3 2576 2692 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_223_c_4 Rep_223_c_4_4 2711 4126 + 2.A.62.1.3
pfam Rep_223_c_4 Rep_223_c_4_5 4172 5149 + PFK
TC Rep_223_c_4 Rep_223_c_4_6 5342 6868 + 3.A.2.1.2
pfam Rep_223_c_4 Rep_223_c_4_7 6933 7172 + ATP-synt_DE_N
NULL(UNKNOWN) Rep_223_c_4 Rep_223_c_4_8 7224 7646 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_223_c_4 Rep_223_c_4_9 7699 8802 + 3.A.2.1.3
Gene ID: Rep_223_c_4_1
Type: CAZyme
Location: 42 - 1022 (-)
Gene ID: Rep_223_c_4_2
Type: pfam
Location: 1067 - 2560 (+)
Gene ID: Rep_223_c_4_3
Type:
Location: 2576 - 2692 (+)
Gene ID: Rep_223_c_4_4
Type: TC
Location: 2711 - 4126 (+)
Gene ID: Rep_223_c_4_5
Type: pfam
Location: 4172 - 5149 (+)
Gene ID: Rep_223_c_4_6
Type: TC
Location: 5342 - 6868 (+)
Gene ID: Rep_223_c_4_7
Type: pfam
Location: 6933 - 7172 (+)
Gene ID: Rep_223_c_4_8
Type:
Location: 7224 - 7646 (+)
Gene ID: Rep_223_c_4_9
Type: TC
Location: 7699 - 8802 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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