Cluster: Rep_2233_CGC7
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2233
- CGC Family ID: CGCFAM_02769
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2233_c_2 | Rep_2233_c_2_64 | 75683 | 76363 | + | 3.A.1.140.1 |
| pfam | Rep_2233_c_2 | Rep_2233_c_2_65 | 76360 | 77268 | + | FtsX | FtsX_ECD |
| TC | Rep_2233_c_2 | Rep_2233_c_2_66 | 77281 | 78576 | + | 1.A.34.1.3 |
| TC | Rep_2233_c_2 | Rep_2233_c_2_67 | 78620 | 79813 | + | 9.B.174.1.2 |
| CAZyme | Rep_2233_c_2 | Rep_2233_c_2_68 | 79875 | 82610 | + | GT51 |
| CAZyme | Rep_2233_c_2 | Rep_2233_c_2_69 | 82695 | 84632 | - | GT51 |
Gene ID: Rep_2233_c_2_64
Type: TC
Location: 75683 - 76363 (+)
Type: TC
Location: 75683 - 76363 (+)
Gene ID: Rep_2233_c_2_65
Type: pfam
Location: 76360 - 77268 (+)
Type: pfam
Location: 76360 - 77268 (+)
Gene ID: Rep_2233_c_2_66
Type: TC
Location: 77281 - 78576 (+)
Type: TC
Location: 77281 - 78576 (+)
Gene ID: Rep_2233_c_2_67
Type: TC
Location: 78620 - 79813 (+)
Type: TC
Location: 78620 - 79813 (+)
Gene ID: Rep_2233_c_2_68
Type: CAZyme
Location: 79875 - 82610 (+)
Type: CAZyme
Location: 79875 - 82610 (+)
Gene ID: Rep_2233_c_2_69
Type: CAZyme
Location: 82695 - 84632 (-)
Type: CAZyme
Location: 82695 - 84632 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Hominiventricola
Species
Hominiventricola sp018223365
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2233_c_2_64 | vegetarian > omnivore | 1.10452 | 0.04890 |
| Rep_2233_c_2_69 | vegetarian > vegan | 1.10611 | 0.01105 |