Cluster: Rep_2233_CGC5
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2233
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2233_c_2 | Rep_2233_c_2_6 | 4596 | 6287 | + | GH13_31 |
| TF | Rep_2233_c_2 | Rep_2233_c_2_7 | 6196 | 7107 | - | HTH_AraC | HTH_AraC |
| CAZyme | Rep_2233_c_2 | Rep_2233_c_2_8 | 7340 | 9523 | + | GH36 |
| TC | Rep_2233_c_2 | Rep_2233_c_2_9 | 9563 | 10987 | + | 4.A.1.2.8 |
| TF | Rep_2233_c_2 | Rep_2233_c_2_10 | 11072 | 11530 | - | HTH_11 |
| TC | Rep_2233_c_2 | Rep_2233_c_2_11 | 11689 | 13017 | + | 2.A.66.1.4 |
Gene ID: Rep_2233_c_2_6
Type: CAZyme
Location: 4596 - 6287 (+)
Type: CAZyme
Location: 4596 - 6287 (+)
Gene ID: Rep_2233_c_2_7
Type: TF
Location: 6196 - 7107 (-)
Type: TF
Location: 6196 - 7107 (-)
Gene ID: Rep_2233_c_2_8
Type: CAZyme
Location: 7340 - 9523 (+)
Type: CAZyme
Location: 7340 - 9523 (+)
Gene ID: Rep_2233_c_2_9
Type: TC
Location: 9563 - 10987 (+)
Type: TC
Location: 9563 - 10987 (+)
Gene ID: Rep_2233_c_2_10
Type: TF
Location: 11072 - 11530 (-)
Type: TF
Location: 11072 - 11530 (-)
Gene ID: Rep_2233_c_2_11
Type: TC
Location: 11689 - 13017 (+)
Type: TC
Location: 11689 - 13017 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Hominiventricola
Species
Hominiventricola sp018223365
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2233_c_2_6 | vegetarian > vegan | 1.24131 | 0.01274 |
| Rep_2233_c_2_7 | vegetarian > vegan | 1.69017 | 0.01274 |
| Rep_2233_c_2_8 | vegetarian > vegan | 1.20931 | 0.01274 |
| Rep_2233_c_2_9 | vegetarian > vegan | 1.17907 | 0.01274 |