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Cluster: Rep_2233_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2233_c_7 Rep_2233_c_7_26 33903 34907 + GT2
CAZyme Rep_2233_c_7 Rep_2233_c_7_27 34853 35857 + GT2
pfam Rep_2233_c_7 Rep_2233_c_7_28 35866 37011 + Glycos_transf_2
CAZyme Rep_2233_c_7 Rep_2233_c_7_29 37016 38182 + GT4
CAZyme Rep_2233_c_7 Rep_2233_c_7_30 38210 39121 - GT11
CAZyme Rep_2233_c_7 Rep_2233_c_7_31 39254 40471 + GT4
TC Rep_2233_c_7 Rep_2233_c_7_32 40532 42397 + 9.B.18.2.1
pfam Rep_2233_c_7 Rep_2233_c_7_33 42400 43533 + Aminotran_1_2 | DegT_DnrJ_EryC1
TC Rep_2233_c_7 Rep_2233_c_7_34 43534 44229 + 9.B.18.1.2
NULL(UNKNOWN) Rep_2233_c_7 Rep_2233_c_7_35 44244 45089 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_2233_c_7 Rep_2233_c_7_36 45111 46340 + GT4
pfam Rep_2233_c_7 Rep_2233_c_7_37 46337 47650 + UDPG_MGDP_dh | NAD_binding_2 | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N
CAZyme Rep_2233_c_7 Rep_2233_c_7_38 47653 48726 + GH177
Gene ID: Rep_2233_c_7_26
Type: CAZyme
Location: 33903 - 34907 (+)
Gene ID: Rep_2233_c_7_27
Type: CAZyme
Location: 34853 - 35857 (+)
Gene ID: Rep_2233_c_7_28
Type: pfam
Location: 35866 - 37011 (+)
Gene ID: Rep_2233_c_7_29
Type: CAZyme
Location: 37016 - 38182 (+)
Gene ID: Rep_2233_c_7_30
Type: CAZyme
Location: 38210 - 39121 (-)
Gene ID: Rep_2233_c_7_31
Type: CAZyme
Location: 39254 - 40471 (+)
Gene ID: Rep_2233_c_7_32
Type: TC
Location: 40532 - 42397 (+)
Gene ID: Rep_2233_c_7_33
Type: pfam
Location: 42400 - 43533 (+)
Gene ID: Rep_2233_c_7_34
Type: TC
Location: 43534 - 44229 (+)
Gene ID: Rep_2233_c_7_35
Type:
Location: 44244 - 45089 (+)
Gene ID: Rep_2233_c_7_36
Type: CAZyme
Location: 45111 - 46340 (+)
Gene ID: Rep_2233_c_7_37
Type: pfam
Location: 46337 - 47650 (+)
Gene ID: Rep_2233_c_7_38
Type: CAZyme
Location: 47653 - 48726 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2233_c_7_34 vegan > omnivore 1.93844 0.03031
Rep_2233_c_7_34 vegetarian > omnivore 2.68842 0.00958

🧭 Explore Read Mapping of CGC

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