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Cluster: Rep_2233_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2233_c_1 Rep_2233_c_1_16 13726 14433 + 3.A.1.122.2
TC Rep_2233_c_1 Rep_2233_c_1_17 14427 15719 + 3.A.1.122.2
peptidase Rep_2233_c_1 Rep_2233_c_1_18 15797 16990 + C40.UPW
TC Rep_2233_c_1 Rep_2233_c_1_19 17100 18293 + 3.A.1.4.10
TC Rep_2233_c_1 Rep_2233_c_1_20 18426 19307 + 3.A.1.4.10
TC Rep_2233_c_1 Rep_2233_c_1_21 19323 20387 + 3.A.1.4.8
TC Rep_2233_c_1 Rep_2233_c_1_22 20389 21171 + 3.A.1.4.10
TC Rep_2233_c_1 Rep_2233_c_1_23 21185 21895 + 3.A.1.4.10
TF Rep_2233_c_1 Rep_2233_c_1_24 22078 23157 + HTH_8
pfam Rep_2233_c_1 Rep_2233_c_1_25 23154 23627 + PTSIIB_sorb
CAZyme Rep_2233_c_1 Rep_2233_c_1_26 23732 25666 + CBM48 | GH13_9
Gene ID: Rep_2233_c_1_16
Type: TC
Location: 13726 - 14433 (+)
Gene ID: Rep_2233_c_1_17
Type: TC
Location: 14427 - 15719 (+)
Gene ID: Rep_2233_c_1_18
Type: peptidase
Location: 15797 - 16990 (+)
Gene ID: Rep_2233_c_1_19
Type: TC
Location: 17100 - 18293 (+)
Gene ID: Rep_2233_c_1_20
Type: TC
Location: 18426 - 19307 (+)
Gene ID: Rep_2233_c_1_21
Type: TC
Location: 19323 - 20387 (+)
Gene ID: Rep_2233_c_1_22
Type: TC
Location: 20389 - 21171 (+)
Gene ID: Rep_2233_c_1_23
Type: TC
Location: 21185 - 21895 (+)
Gene ID: Rep_2233_c_1_24
Type: TF
Location: 22078 - 23157 (+)
Gene ID: Rep_2233_c_1_25
Type: pfam
Location: 23154 - 23627 (+)
Gene ID: Rep_2233_c_1_26
Type: CAZyme
Location: 23732 - 25666 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2233_c_1_21 vegan > omnivore 1.02896 0.00706

🧭 Explore Read Mapping of CGC

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