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Cluster: Rep_2224_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2224_c_17 Rep_2224_c_17_15 20891 21505 - 9.B.27.2.5
CAZyme Rep_2224_c_17 Rep_2224_c_17_16 21575 23578 - GH5_4
CAZyme Rep_2224_c_17 Rep_2224_c_17_17 23611 25308 - CE2 | CE4
CAZyme Rep_2224_c_17 Rep_2224_c_17_18 25346 26590 - CE2
TC Rep_2224_c_17 Rep_2224_c_17_19 26650 28353 - 1.A.33.1.4
STP Rep_2224_c_17 Rep_2224_c_17_20 28350 31682 - TPR_1 | TPR_1 | TPR_2
CAZyme Rep_2224_c_17 Rep_2224_c_17_21 31971 32927 + GT2
pfam Rep_2224_c_17 Rep_2224_c_17_22 32896 33336 + GtrA_DPMS_TM
pfam Rep_2224_c_17 Rep_2224_c_17_23 33329 36106 + YfhO
TC Rep_2224_c_17 Rep_2224_c_17_24 36186 37229 + 3.A.15.2.1
Gene ID: Rep_2224_c_17_15
Type: TC
Location: 20891 - 21505 (-)
Gene ID: Rep_2224_c_17_16
Type: CAZyme
Location: 21575 - 23578 (-)
Gene ID: Rep_2224_c_17_17
Type: CAZyme
Location: 23611 - 25308 (-)
Gene ID: Rep_2224_c_17_18
Type: CAZyme
Location: 25346 - 26590 (-)
Gene ID: Rep_2224_c_17_19
Type: TC
Location: 26650 - 28353 (-)
Gene ID: Rep_2224_c_17_20
Type: STP
Location: 28350 - 31682 (-)
Gene ID: Rep_2224_c_17_21
Type: CAZyme
Location: 31971 - 32927 (+)
Gene ID: Rep_2224_c_17_22
Type: pfam
Location: 32896 - 33336 (+)
Gene ID: Rep_2224_c_17_23
Type: pfam
Location: 33329 - 36106 (+)
Gene ID: Rep_2224_c_17_24
Type: TC
Location: 36186 - 37229 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
UBA4292
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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