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Cluster: Rep_2224_CGC31

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2224_c_152 Rep_2224_c_152_1 193 2685 - GH5_4
TF Rep_2224_c_152 Rep_2224_c_152_2 2844 3674 + HTH_AraC | HTH_AraC
TC Rep_2224_c_152 Rep_2224_c_152_3 3778 4188 - 3.A.2.1.5
TC Rep_2224_c_152 Rep_2224_c_152_4 4199 5587 - 3.A.2.1.5
TC Rep_2224_c_152 Rep_2224_c_152_5 5615 6469 - 3.A.2.1.5
TC Rep_2224_c_152 Rep_2224_c_152_6 6725 8227 - 3.A.2.1.5
TC Rep_2224_c_152 Rep_2224_c_152_7 8250 8816 - 3.A.2.1.3
pfam Rep_2224_c_152 Rep_2224_c_152_8 8804 9364 - ATP-synt_B
TC Rep_2224_c_152 Rep_2224_c_152_9 9426 9677 - 3.A.2.1.5
TC Rep_2224_c_152 Rep_2224_c_152_10 9772 10488 - 3.A.2.1.2
Gene ID: Rep_2224_c_152_1
Type: CAZyme
Location: 193 - 2685 (-)
Gene ID: Rep_2224_c_152_2
Type: TF
Location: 2844 - 3674 (+)
Gene ID: Rep_2224_c_152_3
Type: TC
Location: 3778 - 4188 (-)
Gene ID: Rep_2224_c_152_4
Type: TC
Location: 4199 - 5587 (-)
Gene ID: Rep_2224_c_152_5
Type: TC
Location: 5615 - 6469 (-)
Gene ID: Rep_2224_c_152_6
Type: TC
Location: 6725 - 8227 (-)
Gene ID: Rep_2224_c_152_7
Type: TC
Location: 8250 - 8816 (-)
Gene ID: Rep_2224_c_152_8
Type: pfam
Location: 8804 - 9364 (-)
Gene ID: Rep_2224_c_152_9
Type: TC
Location: 9426 - 9677 (-)
Gene ID: Rep_2224_c_152_10
Type: TC
Location: 9772 - 10488 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
UBA4292
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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