Cluster: Rep_2224_CGC29
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 7
- Substrate:
- Genome ID: Rep_2224
- CGC Family ID: CGCFAM_00208
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2224_c_128 | Rep_2224_c_128_59 | 48719 | 50224 | + | GT4 |
| pfam | Rep_2224_c_128 | Rep_2224_c_128_60 | 50199 | 51665 | + | PelG |
| pfam | Rep_2224_c_128 | Rep_2224_c_128_61 | 51698 | 52099 | + | DUF2304 |
| CAZyme | Rep_2224_c_128 | Rep_2224_c_128_62 | 52140 | 52934 | + | GT2 |
| pfam | Rep_2224_c_128 | Rep_2224_c_128_63 | 52909 | 54192 | + | DUF4832 | DUF4874 |
| CAZyme | Rep_2224_c_128 | Rep_2224_c_128_64 | 54221 | 55315 | + | GT4 |
| CAZyme | Rep_2224_c_128 | Rep_2224_c_128_65 | 55330 | 56283 | + | GT2 |
| CAZyme | Rep_2224_c_128 | Rep_2224_c_128_66 | 56276 | 57376 | + | GT2 |
| NULL(UNKNOWN) | Rep_2224_c_128 | Rep_2224_c_128_67 | 57366 | 58319 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_2224_c_128 | Rep_2224_c_128_68 | 58316 | 59839 | + | 2.A.66.1.40 |
| CAZyme | Rep_2224_c_128 | Rep_2224_c_128_69 | 59865 | 61073 | + | GT4 |
| TC | Rep_2224_c_128 | Rep_2224_c_128_70 | 61150 | 62142 | + | 9.B.97.6.2 |
| pfam | Rep_2224_c_128 | Rep_2224_c_128_71 | 62221 | 63057 | + | PseudoU_synth_1 | PseudoU_synth_1 |
| CAZyme | Rep_2224_c_128 | Rep_2224_c_128_72 | 63050 | 66502 | + | GH2 |
Gene ID: Rep_2224_c_128_59
Type: CAZyme
Location: 48719 - 50224 (+)
Type: CAZyme
Location: 48719 - 50224 (+)
Gene ID: Rep_2224_c_128_60
Type: pfam
Location: 50199 - 51665 (+)
Type: pfam
Location: 50199 - 51665 (+)
Gene ID: Rep_2224_c_128_61
Type: pfam
Location: 51698 - 52099 (+)
Type: pfam
Location: 51698 - 52099 (+)
Gene ID: Rep_2224_c_128_62
Type: CAZyme
Location: 52140 - 52934 (+)
Type: CAZyme
Location: 52140 - 52934 (+)
Gene ID: Rep_2224_c_128_63
Type: pfam
Location: 52909 - 54192 (+)
Type: pfam
Location: 52909 - 54192 (+)
Gene ID: Rep_2224_c_128_64
Type: CAZyme
Location: 54221 - 55315 (+)
Type: CAZyme
Location: 54221 - 55315 (+)
Gene ID: Rep_2224_c_128_65
Type: CAZyme
Location: 55330 - 56283 (+)
Type: CAZyme
Location: 55330 - 56283 (+)
Gene ID: Rep_2224_c_128_66
Type: CAZyme
Location: 56276 - 57376 (+)
Type: CAZyme
Location: 56276 - 57376 (+)
Gene ID: Rep_2224_c_128_67
Type:
Location: 57366 - 58319 (+)
Type:
Location: 57366 - 58319 (+)
Gene ID: Rep_2224_c_128_68
Type: TC
Location: 58316 - 59839 (+)
Type: TC
Location: 58316 - 59839 (+)
Gene ID: Rep_2224_c_128_69
Type: CAZyme
Location: 59865 - 61073 (+)
Type: CAZyme
Location: 59865 - 61073 (+)
Gene ID: Rep_2224_c_128_70
Type: TC
Location: 61150 - 62142 (+)
Type: TC
Location: 61150 - 62142 (+)
Gene ID: Rep_2224_c_128_71
Type: pfam
Location: 62221 - 63057 (+)
Type: pfam
Location: 62221 - 63057 (+)
Gene ID: Rep_2224_c_128_72
Type: CAZyme
Location: 63050 - 66502 (+)
Type: CAZyme
Location: 63050 - 66502 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
UBA4292
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.