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Cluster: Rep_2224_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2224_c_6 Rep_2224_c_6_14 12826 13740 - 3.A.1.131.1
TF Rep_2224_c_6 Rep_2224_c_6_15 13829 14494 - Trans_reg_C
pfam Rep_2224_c_6 Rep_2224_c_6_16 14497 14691 - HTH_17
TC Rep_2224_c_6 Rep_2224_c_6_17 15007 15579 + 3.A.1.25.5
pfam Rep_2224_c_6 Rep_2224_c_6_18 15580 15969 + DUF1284
TF Rep_2224_c_6 Rep_2224_c_6_19 16025 16897 - HTH_AraC | HTH_AraC
CAZyme Rep_2224_c_6 Rep_2224_c_6_20 17129 18667 + GH13_44
CAZyme Rep_2224_c_6 Rep_2224_c_6_21 18823 20784 + GH5_1
TC Rep_2224_c_6 Rep_2224_c_6_22 20805 22436 + 3.A.1.121.4
Gene ID: Rep_2224_c_6_14
Type: TC
Location: 12826 - 13740 (-)
Gene ID: Rep_2224_c_6_15
Type: TF
Location: 13829 - 14494 (-)
Gene ID: Rep_2224_c_6_16
Type: pfam
Location: 14497 - 14691 (-)
Gene ID: Rep_2224_c_6_17
Type: TC
Location: 15007 - 15579 (+)
Gene ID: Rep_2224_c_6_18
Type: pfam
Location: 15580 - 15969 (+)
Gene ID: Rep_2224_c_6_19
Type: TF
Location: 16025 - 16897 (-)
Gene ID: Rep_2224_c_6_20
Type: CAZyme
Location: 17129 - 18667 (+)
Gene ID: Rep_2224_c_6_21
Type: CAZyme
Location: 18823 - 20784 (+)
Gene ID: Rep_2224_c_6_22
Type: TC
Location: 20805 - 22436 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
UBA4292
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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