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Cluster: Rep_220_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_220_c_5 Rep_220_c_5_13 21012 22616 - 2.A.1.1.3
pfam Rep_220_c_5 Rep_220_c_5_14 22630 23949 - AP_endonuc_2
pfam Rep_220_c_5 Rep_220_c_5_15 24056 25528 - FGGY_N | FGGY_C
CAZyme Rep_220_c_5 Rep_220_c_5_16 25931 27976 - GH146
CAZyme Rep_220_c_5 Rep_220_c_5_17 27997 29418 - GH76
CAZyme Rep_220_c_5 Rep_220_c_5_18 29422 31698 - GH92
pfam Rep_220_c_5 Rep_220_c_5_19 31715 32779 - BT_3987-like_N | BT_3044-like_C | DUF4973
pfam Rep_220_c_5 Rep_220_c_5_20 32807 34981 - SusD_RagB | SusD-like_3
TC Rep_220_c_5 Rep_220_c_5_21 34995 38114 - 1.B.14.6.1
Gene ID: Rep_220_c_5_13
Type: TC
Location: 21012 - 22616 (-)
Gene ID: Rep_220_c_5_14
Type: pfam
Location: 22630 - 23949 (-)
Gene ID: Rep_220_c_5_15
Type: pfam
Location: 24056 - 25528 (-)
Gene ID: Rep_220_c_5_16
Type: CAZyme
Location: 25931 - 27976 (-)
Gene ID: Rep_220_c_5_17
Type: CAZyme
Location: 27997 - 29418 (-)
Gene ID: Rep_220_c_5_18
Type: CAZyme
Location: 29422 - 31698 (-)
Gene ID: Rep_220_c_5_19
Type: pfam
Location: 31715 - 32779 (-)
Gene ID: Rep_220_c_5_20
Type: pfam
Location: 32807 - 34981 (-)
Gene ID: Rep_220_c_5_21
Type: TC
Location: 34995 - 38114 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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