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Cluster: Rep_220_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_220_c_2 Rep_220_c_2_20 24205 25542 - 9.B.145.1.2
pfam Rep_220_c_2 Rep_220_c_2_21 25618 26100 - LuxS
pfam Rep_220_c_2 Rep_220_c_2_22 26206 26880 - PNP_UDP_1
TC Rep_220_c_2 Rep_220_c_2_23 27152 29602 + 9.B.144.1.4
CAZyme Rep_220_c_2 Rep_220_c_2_24 29707 32403 + CBM13
pfam Rep_220_c_2 Rep_220_c_2_25 32469 35243 + GHMP_kinases_N | Fucose_pyrophosphorylase | GHMP_kinases_C
pfam Rep_220_c_2 Rep_220_c_2_26 35244 36134 + GSCFA | GSCFA
CAZyme Rep_220_c_2 Rep_220_c_2_27 36189 37814 + CBM91 | GH43_10
Gene ID: Rep_220_c_2_20
Type: TC
Location: 24205 - 25542 (-)
Gene ID: Rep_220_c_2_21
Type: pfam
Location: 25618 - 26100 (-)
Gene ID: Rep_220_c_2_22
Type: pfam
Location: 26206 - 26880 (-)
Gene ID: Rep_220_c_2_23
Type: TC
Location: 27152 - 29602 (+)
Gene ID: Rep_220_c_2_24
Type: CAZyme
Location: 29707 - 32403 (+)
Gene ID: Rep_220_c_2_25
Type: pfam
Location: 32469 - 35243 (+)
Gene ID: Rep_220_c_2_26
Type: pfam
Location: 35244 - 36134 (+)
Gene ID: Rep_220_c_2_27
Type: CAZyme
Location: 36189 - 37814 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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