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Cluster: Rep_220_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_220_c_69 Rep_220_c_69_4 1721 3883 + GH13_38
TF Rep_220_c_69 Rep_220_c_69_5 3902 4789 + HTH_AraC
NULL(UNKNOWN) Rep_220_c_69 Rep_220_c_69_6 4828 4953 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_220_c_69 Rep_220_c_69_7 5017 9024 + 1.B.79.1.2
NULL(UNKNOWN) Rep_220_c_69 Rep_220_c_69_8 9039 9215 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) Rep_220_c_69 Rep_220_c_69_9 9245 9403 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_220_c_69 Rep_220_c_69_10 9337 10392 - GT27
pfam Rep_220_c_69 Rep_220_c_69_11 10461 11786 - UPF0004 | Radical_SAM
TC Rep_220_c_69 Rep_220_c_69_12 12222 13910 - 2.A.53.3.9
Gene ID: Rep_220_c_69_4
Type: CAZyme
Location: 1721 - 3883 (+)
Gene ID: Rep_220_c_69_5
Type: TF
Location: 3902 - 4789 (+)
Gene ID: Rep_220_c_69_6
Type:
Location: 4828 - 4953 (-)
Gene ID: Rep_220_c_69_7
Type: TC
Location: 5017 - 9024 (+)
Gene ID: Rep_220_c_69_8
Type:
Location: 9039 - 9215 (+)
Gene ID: Rep_220_c_69_9
Type:
Location: 9245 - 9403 (+)
Gene ID: Rep_220_c_69_10
Type: CAZyme
Location: 9337 - 10392 (-)
Gene ID: Rep_220_c_69_11
Type: pfam
Location: 10461 - 11786 (-)
Gene ID: Rep_220_c_69_12
Type: TC
Location: 12222 - 13910 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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