dbCAN HGM

Cluster: Rep_2208_CGC9

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
CAZyme	Rep_2208_c_1	Rep_2208_c_1_45	51715	53979	-	GT35
TC	Rep_2208_c_1	Rep_2208_c_1_46	54005	54847	-	3.A.1.1.45
TC	Rep_2208_c_1	Rep_2208_c_1_47	54847	55698	-	3.A.1.1.45
TC	Rep_2208_c_1	Rep_2208_c_1_48	55768	57186	-	3.A.1.1.45
STP	Rep_2208_c_1	Rep_2208_c_1_49	57377	58645	-	SBP_bac_1
TC	Rep_2208_c_1	Rep_2208_c_1_50	58662	60449	-	8.A.59.2.1
TF	Rep_2208_c_1	Rep_2208_c_1_51	60480	62105	-	HTH_AraC \| HTH_AraC
TC	Rep_2208_c_1	Rep_2208_c_1_52	62170	64005	-	3.A.16.1.2
TF	Rep_2208_c_1	Rep_2208_c_1_53	64009	64878	-	HTH_AraC \| HTH_AraC
CAZyme	Rep_2208_c_1	Rep_2208_c_1_54	65044	66591	+	GH13_44
CAZyme	Rep_2208_c_1	Rep_2208_c_1_55	66676	69099	-	GH3

Gene ID: Rep_2208_c_1_45
Type: CAZyme
Location: 51715 - 53979 (-)

Gene ID: Rep_2208_c_1_46
Type: TC
Location: 54005 - 54847 (-)

Gene ID: Rep_2208_c_1_47
Type: TC
Location: 54847 - 55698 (-)

Gene ID: Rep_2208_c_1_48
Type: TC
Location: 55768 - 57186 (-)

Gene ID: Rep_2208_c_1_49
Type: STP
Location: 57377 - 58645 (-)

Gene ID: Rep_2208_c_1_50
Type: TC
Location: 58662 - 60449 (-)

Gene ID: Rep_2208_c_1_51
Type: TF
Location: 60480 - 62105 (-)

Gene ID: Rep_2208_c_1_52
Type: TC
Location: 62170 - 64005 (-)

Gene ID: Rep_2208_c_1_53
Type: TF
Location: 64009 - 64878 (-)

Gene ID: Rep_2208_c_1_54
Type: CAZyme
Location: 65044 - 66591 (+)

Gene ID: Rep_2208_c_1_55
Type: CAZyme
Location: 66676 - 69099 (-)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
Rep_2208_c_1_49	vegetarian > omnivore	1.27316	0.00588
Rep_2208_c_1_49	vegetarian > vegan	1.28081	0.00052
Rep_2208_c_1_51	vegetarian > vegan	1.35210	0.00052
Rep_2208_c_1_53	vegetarian > omnivore	1.21755	0.00588
Rep_2208_c_1_53	vegetarian > vegan	2.71164	0.00052
Rep_2208_c_1_55	vegetarian > vegan	1.97182	0.00052