dbCAN HGM

Cluster: Rep_2208_CGC8

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	Rep_2208_c_0	Rep_2208_c_0_198	233892	235262	+	2.A.66.1.33
CAZyme	Rep_2208_c_0	Rep_2208_c_0_199	235330	237237	-	GH2
pfam	Rep_2208_c_0	Rep_2208_c_0_200	237401	238135	+	YlmH_RBD
pfam	Rep_2208_c_0	Rep_2208_c_0_201	238129	239253	+	SBF \| Mem_trans
CAZyme	Rep_2208_c_0	Rep_2208_c_0_202	239437	240327	+	CE4
pfam	Rep_2208_c_0	Rep_2208_c_0_203	240560	241612	+	Peripla_BP_4
TC	Rep_2208_c_0	Rep_2208_c_0_204	241596	243113	+	8.A.59.2.1
TF	Rep_2208_c_0	Rep_2208_c_0_205	243091	244695	+	HTH_AraC \| HTH_AraC
TC	Rep_2208_c_0	Rep_2208_c_0_206	244692	245741	+	3.A.1.2.26
TC	Rep_2208_c_0	Rep_2208_c_0_207	245947	247122	+	3.A.1.2.5
TC	Rep_2208_c_0	Rep_2208_c_0_208	247285	248829	+	3.A.1.2.5
TC	Rep_2208_c_0	Rep_2208_c_0_209	248826	250016	+	3.A.1.2.5
TC	Rep_2208_c_0	Rep_2208_c_0_210	250125	251894	+	1.B.52.2.2

Gene ID: Rep_2208_c_0_198
Type: TC
Location: 233892 - 235262 (+)

Gene ID: Rep_2208_c_0_199
Type: CAZyme
Location: 235330 - 237237 (-)

Gene ID: Rep_2208_c_0_200
Type: pfam
Location: 237401 - 238135 (+)

Gene ID: Rep_2208_c_0_201
Type: pfam
Location: 238129 - 239253 (+)

Gene ID: Rep_2208_c_0_202
Type: CAZyme
Location: 239437 - 240327 (+)

Gene ID: Rep_2208_c_0_203
Type: pfam
Location: 240560 - 241612 (+)

Gene ID: Rep_2208_c_0_204
Type: TC
Location: 241596 - 243113 (+)

Gene ID: Rep_2208_c_0_205
Type: TF
Location: 243091 - 244695 (+)

Gene ID: Rep_2208_c_0_206
Type: TC
Location: 244692 - 245741 (+)

Gene ID: Rep_2208_c_0_207
Type: TC
Location: 245947 - 247122 (+)

Gene ID: Rep_2208_c_0_208
Type: TC
Location: 247285 - 248829 (+)

Gene ID: Rep_2208_c_0_209
Type: TC
Location: 248826 - 250016 (+)

Gene ID: Rep_2208_c_0_210
Type: TC
Location: 250125 - 251894 (+)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
Rep_2208_c_0_199	vegetarian > vegan	1.08156	0.00052
Rep_2208_c_0_200	vegetarian > vegan	3.34063	0.00052
Rep_2208_c_0_201	vegetarian > omnivore	1.10548	0.00588
Rep_2208_c_0_201	vegetarian > vegan	2.58056	0.00052
Rep_2208_c_0_202	vegetarian > omnivore	1.39558	0.00588
Rep_2208_c_0_205	vegetarian > omnivore	1.61031	0.00588
Rep_2208_c_0_205	vegetarian > vegan	1.14682	0.00052

Gene ID	Condition Pair	log2FC	FDR P-value
Rep_2208_c_0_206	vegan > omnivore	2.59361	0.02677