Cluster: Rep_2208_CGC7
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_2208
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2208_c_0 | Rep_2208_c_0_179 | 207523 | 209433 | + | CE20 | CE20 |
| CAZyme | Rep_2208_c_0 | Rep_2208_c_0_180 | 209417 | 213091 | + | GH2 |
| TF | Rep_2208_c_0 | Rep_2208_c_0_181 | 213088 | 213978 | - | HTH_AraC | HTH_AraC |
| CAZyme | Rep_2208_c_0 | Rep_2208_c_0_182 | 214207 | 216354 | + | GH3 |
| CAZyme | Rep_2208_c_0 | Rep_2208_c_0_183 | 216566 | 218575 | + | GH67 |
| TC | Rep_2208_c_0 | Rep_2208_c_0_184 | 218852 | 219805 | + | 3.A.1.1.10 |
| TC | Rep_2208_c_0 | Rep_2208_c_0_185 | 219818 | 220687 | + | 3.A.1.1.10 |
Gene ID: Rep_2208_c_0_179
Type: CAZyme
Location: 207523 - 209433 (+)
Type: CAZyme
Location: 207523 - 209433 (+)
Gene ID: Rep_2208_c_0_180
Type: CAZyme
Location: 209417 - 213091 (+)
Type: CAZyme
Location: 209417 - 213091 (+)
Gene ID: Rep_2208_c_0_181
Type: TF
Location: 213088 - 213978 (-)
Type: TF
Location: 213088 - 213978 (-)
Gene ID: Rep_2208_c_0_182
Type: CAZyme
Location: 214207 - 216354 (+)
Type: CAZyme
Location: 214207 - 216354 (+)
Gene ID: Rep_2208_c_0_183
Type: CAZyme
Location: 216566 - 218575 (+)
Type: CAZyme
Location: 216566 - 218575 (+)
Gene ID: Rep_2208_c_0_184
Type: TC
Location: 218852 - 219805 (+)
Type: TC
Location: 218852 - 219805 (+)
Gene ID: Rep_2208_c_0_185
Type: TC
Location: 219818 - 220687 (+)
Type: TC
Location: 219818 - 220687 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Suilimivivens
Species
Suilimivivens sp000438155
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2208_c_0_179 | vegetarian > vegan | 1.02223 | 0.00052 |
| Rep_2208_c_0_180 | vegetarian > omnivore | 1.00299 | 0.00588 |
| Rep_2208_c_0_180 | vegetarian > vegan | 2.12919 | 0.00052 |
| Rep_2208_c_0_181 | vegetarian > omnivore | 1.14725 | 0.00588 |
| Rep_2208_c_0_181 | vegetarian > vegan | 2.34886 | 0.00052 |
| Rep_2208_c_0_182 | vegetarian > vegan | 1.28418 | 0.00052 |
| Rep_2208_c_0_183 | vegetarian > vegan | 1.86533 | 0.00052 |
| Rep_2208_c_0_184 | vegetarian > omnivore | 1.35690 | 0.00588 |
| Rep_2208_c_0_184 | vegetarian > vegan | 1.61585 | 0.00052 |
| Rep_2208_c_0_185 | vegetarian > omnivore | 1.35029 | 0.00588 |
| Rep_2208_c_0_185 | vegetarian > vegan | 1.27247 | 0.00052 |