Cluster: Rep_2208_CGC6
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_2208
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2208_c_0 | Rep_2208_c_0_146 | 166033 | 167061 | + | 3.A.1.104.1 |
| TC | Rep_2208_c_0 | Rep_2208_c_0_147 | 167188 | 168516 | + | 3.A.1.103.6 |
| NULL(UNKNOWN) | Rep_2208_c_0 | Rep_2208_c_0_148 | 168536 | 168682 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_2208_c_0 | Rep_2208_c_0_149 | 168627 | 170711 | + | RrnaAD | Methyltransf_11 | Methyltransf_25 |
| CAZyme | Rep_2208_c_0 | Rep_2208_c_0_150 | 170779 | 173475 | + | GT2 |
| CAZyme | Rep_2208_c_0 | Rep_2208_c_0_151 | 173528 | 175537 | + | GT2 | GT2 |
| pfam | Rep_2208_c_0 | Rep_2208_c_0_152 | 175620 | 177341 | + | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III |
| CAZyme | Rep_2208_c_0 | Rep_2208_c_0_153 | 177348 | 178739 | + | GT2 |
| CAZyme | Rep_2208_c_0 | Rep_2208_c_0_154 | 178749 | 179711 | + | GT2 |
| TC | Rep_2208_c_0 | Rep_2208_c_0_155 | 179725 | 181134 | + | 9.B.18.1.1 |
| pfam | Rep_2208_c_0 | Rep_2208_c_0_156 | 181259 | 182569 | + | LytR_cpsA_psr |
| CAZyme | Rep_2208_c_0 | Rep_2208_c_0_157 | 182739 | 183665 | + | GT2 |
Gene ID: Rep_2208_c_0_146
Type: TC
Location: 166033 - 167061 (+)
Type: TC
Location: 166033 - 167061 (+)
Gene ID: Rep_2208_c_0_147
Type: TC
Location: 167188 - 168516 (+)
Type: TC
Location: 167188 - 168516 (+)
Gene ID: Rep_2208_c_0_148
Type:
Location: 168536 - 168682 (+)
Type:
Location: 168536 - 168682 (+)
Gene ID: Rep_2208_c_0_149
Type: pfam
Location: 168627 - 170711 (+)
Type: pfam
Location: 168627 - 170711 (+)
Gene ID: Rep_2208_c_0_150
Type: CAZyme
Location: 170779 - 173475 (+)
Type: CAZyme
Location: 170779 - 173475 (+)
Gene ID: Rep_2208_c_0_151
Type: CAZyme
Location: 173528 - 175537 (+)
Type: CAZyme
Location: 173528 - 175537 (+)
Gene ID: Rep_2208_c_0_152
Type: pfam
Location: 175620 - 177341 (+)
Type: pfam
Location: 175620 - 177341 (+)
Gene ID: Rep_2208_c_0_153
Type: CAZyme
Location: 177348 - 178739 (+)
Type: CAZyme
Location: 177348 - 178739 (+)
Gene ID: Rep_2208_c_0_154
Type: CAZyme
Location: 178749 - 179711 (+)
Type: CAZyme
Location: 178749 - 179711 (+)
Gene ID: Rep_2208_c_0_155
Type: TC
Location: 179725 - 181134 (+)
Type: TC
Location: 179725 - 181134 (+)
Gene ID: Rep_2208_c_0_156
Type: pfam
Location: 181259 - 182569 (+)
Type: pfam
Location: 181259 - 182569 (+)
Gene ID: Rep_2208_c_0_157
Type: CAZyme
Location: 182739 - 183665 (+)
Type: CAZyme
Location: 182739 - 183665 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Suilimivivens
Species
Suilimivivens sp000438155
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2208_c_0_148 | vegetarian > omnivore | 1.08357 | 0.00588 |
| Rep_2208_c_0_148 | vegetarian > vegan | 3.71029 | 0.00052 |
| Rep_2208_c_0_149 | vegetarian > omnivore | 1.41085 | 0.00588 |
| Rep_2208_c_0_149 | vegetarian > vegan | 1.43852 | 0.00052 |
| Rep_2208_c_0_150 | vegetarian > omnivore | 1.16959 | 0.00588 |
| Rep_2208_c_0_150 | vegetarian > vegan | 1.45140 | 0.00052 |
| Rep_2208_c_0_151 | vegetarian > omnivore | 1.20357 | 0.00588 |
| Rep_2208_c_0_153 | vegetarian > vegan | 1.74188 | 0.00052 |
| Rep_2208_c_0_154 | vegetarian > omnivore | 1.11731 | 0.00588 |
| Rep_2208_c_0_154 | vegetarian > vegan | 1.43022 | 0.00052 |
| Rep_2208_c_0_156 | vegetarian > vegan | 1.26774 | 0.00052 |
| Rep_2208_c_0_157 | vegetarian > omnivore | 2.21202 | 0.00588 |
| Rep_2208_c_0_157 | vegetarian > vegan | 2.08006 | 0.00052 |