Cluster: Rep_2208_CGC51
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2208
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2208_c_45 | Rep_2208_c_45_3 | 2801 | 4372 | + | GH9 |
| pfam | Rep_2208_c_45 | Rep_2208_c_45_4 | 4418 | 5443 | + | Dala_Dala_lig_N | ATP-grasp_3 | CPSase_L_D2 | Dala_Dala_lig_C | RimK | ATP-grasp_4 |
| pfam | Rep_2208_c_45 | Rep_2208_c_45_5 | 5452 | 6855 | + | Mur_ligase | Mur_ligase_C | Mur_ligase_M |
| TC | Rep_2208_c_45 | Rep_2208_c_45_6 | 7072 | 8865 | + | 1.A.33.1.4 |
| pfam | Rep_2208_c_45 | Rep_2208_c_45_7 | 8875 | 10371 | + | DnaJ |
| pfam | Rep_2208_c_45 | Rep_2208_c_45_8 | 10376 | 11116 | - | Acyltransferase |
| CAZyme | Rep_2208_c_45 | Rep_2208_c_45_9 | 11333 | 12280 | + | GT2 |
Gene ID: Rep_2208_c_45_3
Type: CAZyme
Location: 2801 - 4372 (+)
Type: CAZyme
Location: 2801 - 4372 (+)
Gene ID: Rep_2208_c_45_4
Type: pfam
Location: 4418 - 5443 (+)
Type: pfam
Location: 4418 - 5443 (+)
Gene ID: Rep_2208_c_45_5
Type: pfam
Location: 5452 - 6855 (+)
Type: pfam
Location: 5452 - 6855 (+)
Gene ID: Rep_2208_c_45_6
Type: TC
Location: 7072 - 8865 (+)
Type: TC
Location: 7072 - 8865 (+)
Gene ID: Rep_2208_c_45_7
Type: pfam
Location: 8875 - 10371 (+)
Type: pfam
Location: 8875 - 10371 (+)
Gene ID: Rep_2208_c_45_8
Type: pfam
Location: 10376 - 11116 (-)
Type: pfam
Location: 10376 - 11116 (-)
Gene ID: Rep_2208_c_45_9
Type: CAZyme
Location: 11333 - 12280 (+)
Type: CAZyme
Location: 11333 - 12280 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Suilimivivens
Species
Suilimivivens sp000438155
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2208_c_45_3 | vegetarian > vegan | 1.60494 | 0.00052 |
| Rep_2208_c_45_4 | vegetarian > omnivore | 1.20293 | 0.00588 |
| Rep_2208_c_45_5 | vegetarian > vegan | 1.49179 | 0.00052 |
| Rep_2208_c_45_6 | vegetarian > omnivore | 1.35960 | 0.00588 |
| Rep_2208_c_45_6 | vegetarian > vegan | 2.47775 | 0.00052 |
| Rep_2208_c_45_7 | vegetarian > omnivore | 1.21646 | 0.00588 |
| Rep_2208_c_45_7 | vegetarian > vegan | 1.66981 | 0.00052 |
| Rep_2208_c_45_8 | vegetarian > omnivore | 1.26010 | 0.00588 |
| Rep_2208_c_45_8 | vegetarian > vegan | 1.67866 | 0.00052 |
| Rep_2208_c_45_9 | vegetarian > vegan | 1.59909 | 0.00052 |