Cluster: Rep_2208_CGC5
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2208
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2208_c_0 | Rep_2208_c_0_140 | 159226 | 159561 | + | 2.A.7.33.5 |
| NULL(UNKNOWN) | Rep_2208_c_0 | Rep_2208_c_0_141 | 159545 | 159853 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_2208_c_0 | Rep_2208_c_0_142 | 160222 | 162981 | + | GH25 |
Gene ID: Rep_2208_c_0_140
Type: TC
Location: 159226 - 159561 (+)
Type: TC
Location: 159226 - 159561 (+)
Gene ID: Rep_2208_c_0_141
Type:
Location: 159545 - 159853 (-)
Type:
Location: 159545 - 159853 (-)
Gene ID: Rep_2208_c_0_142
Type: CAZyme
Location: 160222 - 162981 (+)
Type: CAZyme
Location: 160222 - 162981 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Suilimivivens
Species
Suilimivivens sp000438155
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2208_c_0_140 | vegetarian > vegan | 2.72445 | 0.00052 |
| Rep_2208_c_0_141 | vegetarian > vegan | 2.23459 | 0.00052 |
| Rep_2208_c_0_142 | vegetarian > omnivore | 1.19658 | 0.00588 |
| Rep_2208_c_0_142 | vegetarian > vegan | 1.01398 | 0.00052 |