Cluster: Rep_2208_CGC49
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2208
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2208_c_42 | Rep_2208_c_42_3 | 1410 | 2756 | - | 2.A.45.2.2 |
| peptidase | Rep_2208_c_42 | Rep_2208_c_42_4 | 3049 | 4470 | + | S11.UPW |
| pfam | Rep_2208_c_42 | Rep_2208_c_42_5 | 4506 | 5444 | - | RNase_T |
| TC | Rep_2208_c_42 | Rep_2208_c_42_6 | 5679 | 7349 | + | 3.A.1.106.2 |
| TC | Rep_2208_c_42 | Rep_2208_c_42_7 | 7454 | 8227 | - | 3.A.1.34.1 |
| TC | Rep_2208_c_42 | Rep_2208_c_42_8 | 8224 | 9153 | - | 3.A.1.34.1 |
| TC | Rep_2208_c_42 | Rep_2208_c_42_9 | 9188 | 10306 | - | 3.A.1.34.1 |
| pfam | Rep_2208_c_42 | Rep_2208_c_42_10 | 10793 | 11728 | - | Tim44 |
| CAZyme | Rep_2208_c_42 | Rep_2208_c_42_11 | 11814 | 13943 | - | GH36 |
Gene ID: Rep_2208_c_42_3
Type: TC
Location: 1410 - 2756 (-)
Type: TC
Location: 1410 - 2756 (-)
Gene ID: Rep_2208_c_42_4
Type: peptidase
Location: 3049 - 4470 (+)
Type: peptidase
Location: 3049 - 4470 (+)
Gene ID: Rep_2208_c_42_5
Type: pfam
Location: 4506 - 5444 (-)
Type: pfam
Location: 4506 - 5444 (-)
Gene ID: Rep_2208_c_42_6
Type: TC
Location: 5679 - 7349 (+)
Type: TC
Location: 5679 - 7349 (+)
Gene ID: Rep_2208_c_42_7
Type: TC
Location: 7454 - 8227 (-)
Type: TC
Location: 7454 - 8227 (-)
Gene ID: Rep_2208_c_42_8
Type: TC
Location: 8224 - 9153 (-)
Type: TC
Location: 8224 - 9153 (-)
Gene ID: Rep_2208_c_42_9
Type: TC
Location: 9188 - 10306 (-)
Type: TC
Location: 9188 - 10306 (-)
Gene ID: Rep_2208_c_42_10
Type: pfam
Location: 10793 - 11728 (-)
Type: pfam
Location: 10793 - 11728 (-)
Gene ID: Rep_2208_c_42_11
Type: CAZyme
Location: 11814 - 13943 (-)
Type: CAZyme
Location: 11814 - 13943 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Suilimivivens
Species
Suilimivivens sp000438155
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2208_c_42_4 | vegetarian > vegan | 1.42130 | 0.00052 |
| Rep_2208_c_42_5 | vegetarian > vegan | 1.21915 | 0.00052 |
| Rep_2208_c_42_6 | vegetarian > omnivore | 1.05568 | 0.00588 |
| Rep_2208_c_42_6 | vegetarian > vegan | 1.65980 | 0.00052 |
| Rep_2208_c_42_7 | vegetarian > omnivore | 1.47505 | 0.00588 |
| Rep_2208_c_42_7 | vegetarian > vegan | 1.05239 | 0.00052 |
| Rep_2208_c_42_9 | vegetarian > vegan | 1.08914 | 0.00052 |
| Rep_2208_c_42_10 | vegetarian > vegan | 1.76023 | 0.00052 |