Cluster: Rep_2208_CGC46
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2208
- CGC Family ID: CGCFAM_04325
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2208_c_38 | Rep_2208_c_38_7 | 7904 | 9586 | - | 1.B.52.2.1 |
| TC | Rep_2208_c_38 | Rep_2208_c_38_8 | 9887 | 11467 | - | 9.B.34.1.4 |
| NULL(UNKNOWN) | Rep_2208_c_38 | Rep_2208_c_38_9 | 11752 | 12411 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_2208_c_38 | Rep_2208_c_38_10 | 12593 | 13675 | + | GT28 |
| NULL(UNKNOWN) | Rep_2208_c_38 | Rep_2208_c_38_11 | 13695 | 14777 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_2208_c_38 | Rep_2208_c_38_12 | 15023 | 16519 | - | 2.A.50.2.1 |
Gene ID: Rep_2208_c_38_7
Type: TC
Location: 7904 - 9586 (-)
Type: TC
Location: 7904 - 9586 (-)
Gene ID: Rep_2208_c_38_8
Type: TC
Location: 9887 - 11467 (-)
Type: TC
Location: 9887 - 11467 (-)
Gene ID: Rep_2208_c_38_9
Type:
Location: 11752 - 12411 (-)
Type:
Location: 11752 - 12411 (-)
Gene ID: Rep_2208_c_38_10
Type: CAZyme
Location: 12593 - 13675 (+)
Type: CAZyme
Location: 12593 - 13675 (+)
Gene ID: Rep_2208_c_38_11
Type:
Location: 13695 - 14777 (-)
Type:
Location: 13695 - 14777 (-)
Gene ID: Rep_2208_c_38_12
Type: TC
Location: 15023 - 16519 (-)
Type: TC
Location: 15023 - 16519 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Suilimivivens
Species
Suilimivivens sp000438155
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2208_c_38_7 | vegetarian > vegan | 1.00923 | 0.00052 |
| Rep_2208_c_38_8 | vegetarian > vegan | 1.54908 | 0.00052 |
| Rep_2208_c_38_9 | vegetarian > omnivore | 1.25240 | 0.00588 |
| Rep_2208_c_38_9 | vegetarian > vegan | 3.00866 | 0.00052 |
| Rep_2208_c_38_10 | vegetarian > vegan | 1.96018 | 0.00052 |
| Rep_2208_c_38_11 | vegetarian > omnivore | 1.35968 | 0.00588 |
| Rep_2208_c_38_11 | vegetarian > vegan | 1.59935 | 0.00052 |
| Rep_2208_c_38_12 | vegetarian > vegan | 1.63741 | 0.00052 |