Cluster: Rep_2208_CGC43
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2208
- CGC Family ID: CGCFAM_07713
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2208_c_30 | Rep_2208_c_30_14 | 10582 | 11334 | - | 3.A.1.5.23 |
| pfam | Rep_2208_c_30 | Rep_2208_c_30_15 | 11466 | 12230 | - | TPK_catalytic | TPK_B1_binding |
| TC | Rep_2208_c_30 | Rep_2208_c_30_16 | 12305 | 14734 | - | 8.A.59.4.1 |
| CAZyme | Rep_2208_c_30 | Rep_2208_c_30_17 | 14923 | 16980 | - | GH2 |
Gene ID: Rep_2208_c_30_14
Type: TC
Location: 10582 - 11334 (-)
Type: TC
Location: 10582 - 11334 (-)
Gene ID: Rep_2208_c_30_15
Type: pfam
Location: 11466 - 12230 (-)
Type: pfam
Location: 11466 - 12230 (-)
Gene ID: Rep_2208_c_30_16
Type: TC
Location: 12305 - 14734 (-)
Type: TC
Location: 12305 - 14734 (-)
Gene ID: Rep_2208_c_30_17
Type: CAZyme
Location: 14923 - 16980 (-)
Type: CAZyme
Location: 14923 - 16980 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Suilimivivens
Species
Suilimivivens sp000438155
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2208_c_30_15 | vegetarian > vegan | 2.22945 | 0.00052 |
| Rep_2208_c_30_16 | vegetarian > omnivore | 1.78754 | 0.00588 |
| Rep_2208_c_30_16 | vegetarian > vegan | 1.66813 | 0.00052 |
| Rep_2208_c_30_17 | vegetarian > omnivore | 1.38480 | 0.00588 |