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Cluster: Rep_2208_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2208_c_0 Rep_2208_c_0_92 109529 111313 + 3.A.1.106.15
CAZyme Rep_2208_c_0 Rep_2208_c_0_93 111341 112066 + GT2
pfam Rep_2208_c_0 Rep_2208_c_0_94 112063 112422 + DUF2304
NULL(UNKNOWN) Rep_2208_c_0 Rep_2208_c_0_95 112424 114205 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_2208_c_0 Rep_2208_c_0_96 114227 114970 + GT2
NULL(UNKNOWN) Rep_2208_c_0 Rep_2208_c_0_97 115006 115965 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2208_c_0 Rep_2208_c_0_98 115977 117341 - 2.A.50.2.1
CAZyme Rep_2208_c_0 Rep_2208_c_0_99 118149 119093 + GT2
Gene ID: Rep_2208_c_0_92
Type: TC
Location: 109529 - 111313 (+)
Gene ID: Rep_2208_c_0_93
Type: CAZyme
Location: 111341 - 112066 (+)
Gene ID: Rep_2208_c_0_94
Type: pfam
Location: 112063 - 112422 (+)
Gene ID: Rep_2208_c_0_95
Type:
Location: 112424 - 114205 (+)
Gene ID: Rep_2208_c_0_96
Type: CAZyme
Location: 114227 - 114970 (+)
Gene ID: Rep_2208_c_0_97
Type:
Location: 115006 - 115965 (-)
Gene ID: Rep_2208_c_0_98
Type: TC
Location: 115977 - 117341 (-)
Gene ID: Rep_2208_c_0_99
Type: CAZyme
Location: 118149 - 119093 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2208_c_0_92 vegetarian > omnivore 1.53043 0.00588

🧭 Explore Read Mapping of CGC

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