Cluster: Rep_2208_CGC38
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2208
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2208_c_22 | Rep_2208_c_22_39 | 39676 | 40701 | + | GT2 |
| pfam | Rep_2208_c_22 | Rep_2208_c_22_40 | 41206 | 42099 | + | Transposase_31 |
| STP | Rep_2208_c_22 | Rep_2208_c_22_41 | 42297 | 43226 | + | LysR_substrate |
| TC | Rep_2208_c_22 | Rep_2208_c_22_42 | 43423 | 44289 | + | 3.A.1.7.1 |
| TC | Rep_2208_c_22 | Rep_2208_c_22_43 | 44291 | 45154 | + | 3.A.1.7.2 |
| TC | Rep_2208_c_22 | Rep_2208_c_22_44 | 45158 | 45913 | + | 3.A.1.7.5 |
Gene ID: Rep_2208_c_22_39
Type: CAZyme
Location: 39676 - 40701 (+)
Type: CAZyme
Location: 39676 - 40701 (+)
Gene ID: Rep_2208_c_22_40
Type: pfam
Location: 41206 - 42099 (+)
Type: pfam
Location: 41206 - 42099 (+)
Gene ID: Rep_2208_c_22_41
Type: STP
Location: 42297 - 43226 (+)
Type: STP
Location: 42297 - 43226 (+)
Gene ID: Rep_2208_c_22_42
Type: TC
Location: 43423 - 44289 (+)
Type: TC
Location: 43423 - 44289 (+)
Gene ID: Rep_2208_c_22_43
Type: TC
Location: 44291 - 45154 (+)
Type: TC
Location: 44291 - 45154 (+)
Gene ID: Rep_2208_c_22_44
Type: TC
Location: 45158 - 45913 (+)
Type: TC
Location: 45158 - 45913 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Suilimivivens
Species
Suilimivivens sp000438155
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2208_c_22_40 | vegetarian > omnivore | 1.76705 | 0.00588 |
| Rep_2208_c_22_40 | vegetarian > vegan | 3.11497 | 0.00052 |
| Rep_2208_c_22_42 | vegetarian > vegan | 1.00420 | 0.00052 |
| Rep_2208_c_22_43 | vegetarian > vegan | 1.63404 | 0.00052 |