Cluster: Rep_2208_CGC37
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2208
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2208_c_22 | Rep_2208_c_22_2 | 509 | 3097 | + | 3.A.9.1.2 |
| pfam | Rep_2208_c_22 | Rep_2208_c_22_3 | 3242 | 3430 | + | DUF4250 |
| CAZyme | Rep_2208_c_22 | Rep_2208_c_22_4 | 3484 | 4167 | + | CE4 |
| TC | Rep_2208_c_22 | Rep_2208_c_22_5 | 4264 | 5109 | + | 1.A.16.1.1 |
Gene ID: Rep_2208_c_22_2
Type: TC
Location: 509 - 3097 (+)
Type: TC
Location: 509 - 3097 (+)
Gene ID: Rep_2208_c_22_3
Type: pfam
Location: 3242 - 3430 (+)
Type: pfam
Location: 3242 - 3430 (+)
Gene ID: Rep_2208_c_22_4
Type: CAZyme
Location: 3484 - 4167 (+)
Type: CAZyme
Location: 3484 - 4167 (+)
Gene ID: Rep_2208_c_22_5
Type: TC
Location: 4264 - 5109 (+)
Type: TC
Location: 4264 - 5109 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Suilimivivens
Species
Suilimivivens sp000438155
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2208_c_22_3 | vegetarian > omnivore | 1.26908 | 0.00588 |
| Rep_2208_c_22_3 | vegetarian > vegan | 2.33026 | 0.00052 |
| Rep_2208_c_22_4 | vegetarian > omnivore | 1.13455 | 0.00588 |
| Rep_2208_c_22_4 | vegetarian > vegan | 1.38907 | 0.00052 |
| Rep_2208_c_22_5 | vegetarian > omnivore | 1.54327 | 0.00588 |
| Rep_2208_c_22_5 | vegetarian > vegan | 2.31098 | 0.00052 |