Cluster: Rep_2208_CGC36
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_2208
- CGC Family ID: CGCFAM_03690
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2208_c_21 | Rep_2208_c_21_4 | 4767 | 5657 | - | 3.A.1.1.29 |
| TC | Rep_2208_c_21 | Rep_2208_c_21_5 | 5670 | 6590 | - | 3.A.1.1.10 |
| TF | Rep_2208_c_21 | Rep_2208_c_21_6 | 6766 | 8337 | + | HTH_AraC | HTH_AraC |
| TC | Rep_2208_c_21 | Rep_2208_c_21_7 | 8353 | 10170 | + | 9.B.33.1.1 |
| CAZyme | Rep_2208_c_21 | Rep_2208_c_21_8 | 10274 | 11914 | + | GH63 |
| pfam | Rep_2208_c_21 | Rep_2208_c_21_9 | 11920 | 12954 | + | Epimerase |
| CAZyme | Rep_2208_c_21 | Rep_2208_c_21_10 | 12988 | 14727 | + | GH146 |
| CAZyme | Rep_2208_c_21 | Rep_2208_c_21_11 | 14900 | 16915 | - | GH42 |
Gene ID: Rep_2208_c_21_4
Type: TC
Location: 4767 - 5657 (-)
Type: TC
Location: 4767 - 5657 (-)
Gene ID: Rep_2208_c_21_5
Type: TC
Location: 5670 - 6590 (-)
Type: TC
Location: 5670 - 6590 (-)
Gene ID: Rep_2208_c_21_6
Type: TF
Location: 6766 - 8337 (+)
Type: TF
Location: 6766 - 8337 (+)
Gene ID: Rep_2208_c_21_7
Type: TC
Location: 8353 - 10170 (+)
Type: TC
Location: 8353 - 10170 (+)
Gene ID: Rep_2208_c_21_8
Type: CAZyme
Location: 10274 - 11914 (+)
Type: CAZyme
Location: 10274 - 11914 (+)
Gene ID: Rep_2208_c_21_9
Type: pfam
Location: 11920 - 12954 (+)
Type: pfam
Location: 11920 - 12954 (+)
Gene ID: Rep_2208_c_21_10
Type: CAZyme
Location: 12988 - 14727 (+)
Type: CAZyme
Location: 12988 - 14727 (+)
Gene ID: Rep_2208_c_21_11
Type: CAZyme
Location: 14900 - 16915 (-)
Type: CAZyme
Location: 14900 - 16915 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Suilimivivens
Species
Suilimivivens sp000438155
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2208_c_21_5 | vegetarian > omnivore | 1.23935 | 0.00588 |
| Rep_2208_c_21_5 | vegetarian > vegan | 1.74596 | 0.00052 |
| Rep_2208_c_21_6 | vegetarian > vegan | 1.68395 | 0.00052 |
| Rep_2208_c_21_7 | vegetarian > omnivore | 1.64155 | 0.00588 |
| Rep_2208_c_21_7 | vegetarian > vegan | 1.11492 | 0.00052 |
| Rep_2208_c_21_8 | vegetarian > vegan | 1.07462 | 0.00052 |
| Rep_2208_c_21_10 | vegetarian > omnivore | 1.49631 | 0.00588 |
| Rep_2208_c_21_10 | vegetarian > vegan | 1.36910 | 0.00052 |
| Rep_2208_c_21_11 | vegetarian > omnivore | 1.32823 | 0.00588 |
| Rep_2208_c_21_11 | vegetarian > vegan | 1.93625 | 0.00052 |