Cluster: Rep_2208_CGC33
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2208
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2208_c_19 | Rep_2208_c_19_6 | 4746 | 5630 | + | 3.A.1.1.18 |
| TC | Rep_2208_c_19 | Rep_2208_c_19_7 | 5633 | 6472 | + | 3.A.1.1.18 |
| CAZyme | Rep_2208_c_19 | Rep_2208_c_19_8 | 6501 | 8960 | + | GH116 |
| CAZyme | Rep_2208_c_19 | Rep_2208_c_19_9 | 8994 | 10700 | + | GH13_31 |
Gene ID: Rep_2208_c_19_6
Type: TC
Location: 4746 - 5630 (+)
Type: TC
Location: 4746 - 5630 (+)
Gene ID: Rep_2208_c_19_7
Type: TC
Location: 5633 - 6472 (+)
Type: TC
Location: 5633 - 6472 (+)
Gene ID: Rep_2208_c_19_8
Type: CAZyme
Location: 6501 - 8960 (+)
Type: CAZyme
Location: 6501 - 8960 (+)
Gene ID: Rep_2208_c_19_9
Type: CAZyme
Location: 8994 - 10700 (+)
Type: CAZyme
Location: 8994 - 10700 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Suilimivivens
Species
Suilimivivens sp000438155
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2208_c_19_6 | vegetarian > vegan | 1.38628 | 0.00052 |
| Rep_2208_c_19_7 | vegetarian > vegan | 2.66614 | 0.00052 |
| Rep_2208_c_19_8 | vegetarian > vegan | 2.24152 | 0.00052 |