Cluster: Rep_2208_CGC32
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2208
- CGC Family ID: CGCFAM_07017
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2208_c_18 | Rep_2208_c_18_43 | 52714 | 53427 | - | GT2 |
| CAZyme | Rep_2208_c_18 | Rep_2208_c_18_44 | 53489 | 55798 | - | GT35 |
| TC | Rep_2208_c_18 | Rep_2208_c_18_45 | 55966 | 56679 | - | 9.B.20.1.4 |
| STP | Rep_2208_c_18 | Rep_2208_c_18_46 | 56750 | 57109 | - | Response_reg |
| pfam | Rep_2208_c_18 | Rep_2208_c_18_47 | 57134 | 58021 | - | CheX |
| TC | Rep_2208_c_18 | Rep_2208_c_18_48 | 58555 | 59961 | - | 2.A.66.1.32 |
Gene ID: Rep_2208_c_18_43
Type: CAZyme
Location: 52714 - 53427 (-)
Type: CAZyme
Location: 52714 - 53427 (-)
Gene ID: Rep_2208_c_18_44
Type: CAZyme
Location: 53489 - 55798 (-)
Type: CAZyme
Location: 53489 - 55798 (-)
Gene ID: Rep_2208_c_18_45
Type: TC
Location: 55966 - 56679 (-)
Type: TC
Location: 55966 - 56679 (-)
Gene ID: Rep_2208_c_18_46
Type: STP
Location: 56750 - 57109 (-)
Type: STP
Location: 56750 - 57109 (-)
Gene ID: Rep_2208_c_18_47
Type: pfam
Location: 57134 - 58021 (-)
Type: pfam
Location: 57134 - 58021 (-)
Gene ID: Rep_2208_c_18_48
Type: TC
Location: 58555 - 59961 (-)
Type: TC
Location: 58555 - 59961 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Suilimivivens
Species
Suilimivivens sp000438155
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2208_c_18_43 | vegetarian > vegan | 1.85307 | 0.00052 |
| Rep_2208_c_18_45 | vegetarian > vegan | 1.58909 | 0.00052 |
| Rep_2208_c_18_46 | vegetarian > omnivore | 1.22462 | 0.00588 |
| Rep_2208_c_18_46 | vegetarian > vegan | 1.44951 | 0.00052 |
| Rep_2208_c_18_47 | vegetarian > omnivore | 1.37034 | 0.00588 |
| Rep_2208_c_18_47 | vegetarian > vegan | 1.19860 | 0.00052 |