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Cluster: Rep_2208_CGC31

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2208_c_17 Rep_2208_c_17_15 12564 15083 - 3.A.3.5.15
pfam Rep_2208_c_17 Rep_2208_c_17_16 15193 15522 - Trns_repr_metal
TC Rep_2208_c_17 Rep_2208_c_17_17 15858 16832 - 4.A.1.1.7
TC Rep_2208_c_17 Rep_2208_c_17_18 16878 17330 - 4.A.1.1.5
TC Rep_2208_c_17 Rep_2208_c_17_19 17404 17883 - 4.A.1.2.11
CAZyme Rep_2208_c_17 Rep_2208_c_17_20 17877 19007 - CE9
sulfatase Rep_2208_c_17 Rep_2208_c_17_21 19049 19789 - S1_9
TC Rep_2208_c_17 Rep_2208_c_17_22 19795 21414 - 8.A.7.1.1
STP Rep_2208_c_17 Rep_2208_c_17_23 21450 21707 - PTS-HPr
peptidase Rep_2208_c_17 Rep_2208_c_17_24 21909 23324 - S11.UPW
TC Rep_2208_c_17 Rep_2208_c_17_25 23715 24530 - 3.A.1.24.5
TC Rep_2208_c_17 Rep_2208_c_17_26 24718 26739 - 3.A.1.135.5
TC Rep_2208_c_17 Rep_2208_c_17_27 26736 28478 - 3.A.1.135.5
Gene ID: Rep_2208_c_17_15
Type: TC
Location: 12564 - 15083 (-)
Gene ID: Rep_2208_c_17_16
Type: pfam
Location: 15193 - 15522 (-)
Gene ID: Rep_2208_c_17_17
Type: TC
Location: 15858 - 16832 (-)
Gene ID: Rep_2208_c_17_18
Type: TC
Location: 16878 - 17330 (-)
Gene ID: Rep_2208_c_17_19
Type: TC
Location: 17404 - 17883 (-)
Gene ID: Rep_2208_c_17_20
Type: CAZyme
Location: 17877 - 19007 (-)
Gene ID: Rep_2208_c_17_21
Type: sulfatase
Location: 19049 - 19789 (-)
Gene ID: Rep_2208_c_17_22
Type: TC
Location: 19795 - 21414 (-)
Gene ID: Rep_2208_c_17_23
Type: STP
Location: 21450 - 21707 (-)
Gene ID: Rep_2208_c_17_24
Type: peptidase
Location: 21909 - 23324 (-)
Gene ID: Rep_2208_c_17_25
Type: TC
Location: 23715 - 24530 (-)
Gene ID: Rep_2208_c_17_26
Type: TC
Location: 24718 - 26739 (-)
Gene ID: Rep_2208_c_17_27
Type: TC
Location: 26736 - 28478 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2208_c_17_16 vegetarian > vegan 2.38579 0.00052
Rep_2208_c_17_19 vegetarian > vegan 1.19415 0.00052
Rep_2208_c_17_20 vegetarian > omnivore 1.77849 0.00588
Rep_2208_c_17_20 vegetarian > vegan 1.00208 0.00052
Rep_2208_c_17_23 vegetarian > omnivore 1.75466 0.00588
Rep_2208_c_17_23 vegetarian > vegan 2.35740 0.00052
Rep_2208_c_17_24 vegetarian > vegan 1.16422 0.00052

🧭 Explore Read Mapping of CGC

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