Cluster: Rep_2208_CGC30
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2208
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2208_c_16 | Rep_2208_c_16_40 | 42860 | 44233 | + | 2.A.22.5.3 |
| pfam | Rep_2208_c_16 | Rep_2208_c_16_41 | 44545 | 44811 | + | PhdYeFM_antitox |
| pfam | Rep_2208_c_16 | Rep_2208_c_16_42 | 44804 | 45067 | + | YoeB_toxin |
| TC | Rep_2208_c_16 | Rep_2208_c_16_43 | 45193 | 45777 | - | 2.A.107.1.2 |
| TF | Rep_2208_c_16 | Rep_2208_c_16_44 | 46272 | 47237 | - | HTH_AraC |
| CAZyme | Rep_2208_c_16 | Rep_2208_c_16_45 | 48365 | 50359 | + | GH31_4 |
| TC | Rep_2208_c_16 | Rep_2208_c_16_46 | 50680 | 51096 | + | 1.A.22.1.3 |
| STP | Rep_2208_c_16 | Rep_2208_c_16_47 | 51499 | 52362 | + | PfkB |
| CAZyme | Rep_2208_c_16 | Rep_2208_c_16_48 | 52477 | 54912 | - | GH94 |
| TF | Rep_2208_c_16 | Rep_2208_c_16_49 | 55321 | 56394 | + | LacI |
| TC | Rep_2208_c_16 | Rep_2208_c_16_50 | 56530 | 57435 | + | 3.A.1.1.29 |
| TC | Rep_2208_c_16 | Rep_2208_c_16_51 | 57454 | 58386 | + | 3.A.1.1.29 |
Gene ID: Rep_2208_c_16_40
Type: TC
Location: 42860 - 44233 (+)
Type: TC
Location: 42860 - 44233 (+)
Gene ID: Rep_2208_c_16_41
Type: pfam
Location: 44545 - 44811 (+)
Type: pfam
Location: 44545 - 44811 (+)
Gene ID: Rep_2208_c_16_42
Type: pfam
Location: 44804 - 45067 (+)
Type: pfam
Location: 44804 - 45067 (+)
Gene ID: Rep_2208_c_16_43
Type: TC
Location: 45193 - 45777 (-)
Type: TC
Location: 45193 - 45777 (-)
Gene ID: Rep_2208_c_16_44
Type: TF
Location: 46272 - 47237 (-)
Type: TF
Location: 46272 - 47237 (-)
Gene ID: Rep_2208_c_16_45
Type: CAZyme
Location: 48365 - 50359 (+)
Type: CAZyme
Location: 48365 - 50359 (+)
Gene ID: Rep_2208_c_16_46
Type: TC
Location: 50680 - 51096 (+)
Type: TC
Location: 50680 - 51096 (+)
Gene ID: Rep_2208_c_16_47
Type: STP
Location: 51499 - 52362 (+)
Type: STP
Location: 51499 - 52362 (+)
Gene ID: Rep_2208_c_16_48
Type: CAZyme
Location: 52477 - 54912 (-)
Type: CAZyme
Location: 52477 - 54912 (-)
Gene ID: Rep_2208_c_16_49
Type: TF
Location: 55321 - 56394 (+)
Type: TF
Location: 55321 - 56394 (+)
Gene ID: Rep_2208_c_16_50
Type: TC
Location: 56530 - 57435 (+)
Type: TC
Location: 56530 - 57435 (+)
Gene ID: Rep_2208_c_16_51
Type: TC
Location: 57454 - 58386 (+)
Type: TC
Location: 57454 - 58386 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Suilimivivens
Species
Suilimivivens sp000438155
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2208_c_16_41 | vegetarian > vegan | 2.20229 | 0.00052 |
| Rep_2208_c_16_43 | vegetarian > vegan | 1.31907 | 0.00052 |
| Rep_2208_c_16_45 | vegetarian > vegan | 1.24454 | 0.00052 |
| Rep_2208_c_16_47 | vegetarian > omnivore | 1.50897 | 0.00588 |
| Rep_2208_c_16_47 | vegetarian > vegan | 2.29703 | 0.00052 |
| Rep_2208_c_16_49 | vegetarian > vegan | 1.75800 | 0.00052 |