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Cluster: Rep_2208_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2208_c_0 Rep_2208_c_0_51 63298 64458 + GT4
CAZyme Rep_2208_c_0 Rep_2208_c_0_52 64461 65648 + GT4
pfam Rep_2208_c_0 Rep_2208_c_0_53 65645 66175 + Hexapep | Hexapep_2
CAZyme Rep_2208_c_0 Rep_2208_c_0_54 66182 68188 + GT26
NULL(UNKNOWN) Rep_2208_c_0 Rep_2208_c_0_55 68203 69333 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) Rep_2208_c_0 Rep_2208_c_0_56 69327 70061 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2208_c_0 Rep_2208_c_0_57 70069 71529 + 2.A.50.2.1
NULL(UNKNOWN) Rep_2208_c_0 Rep_2208_c_0_58 71498 72799 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_2208_c_0 Rep_2208_c_0_59 72814 73569 + GT2
NULL(UNKNOWN) Rep_2208_c_0 Rep_2208_c_0_60 73566 73676 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_2208_c_0 Rep_2208_c_0_61 73698 74942 + GT4
pfam Rep_2208_c_0 Rep_2208_c_0_62 74961 76067 + Epimerase_2
CAZyme Rep_2208_c_0 Rep_2208_c_0_63 76086 76955 + GT2
TC Rep_2208_c_0 Rep_2208_c_0_64 76979 78757 + 3.A.1.106.15
CAZyme Rep_2208_c_0 Rep_2208_c_0_65 78747 79748 + GT2
NULL(UNKNOWN) Rep_2208_c_0 Rep_2208_c_0_66 79872 81008 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_2208_c_0 Rep_2208_c_0_67 81008 82078 + GH179
pfam Rep_2208_c_0 Rep_2208_c_0_68 82075 82647 + Hexapep | Hexapep | Hexapep_2 | Hexapep_2
STP Rep_2208_c_0 Rep_2208_c_0_69 82629 83759 + Aminotran_1_2
CAZyme Rep_2208_c_0 Rep_2208_c_0_70 83772 85031 + GT4
CAZyme Rep_2208_c_0 Rep_2208_c_0_71 85031 85783 + GT2
Gene ID: Rep_2208_c_0_51
Type: CAZyme
Location: 63298 - 64458 (+)
Gene ID: Rep_2208_c_0_52
Type: CAZyme
Location: 64461 - 65648 (+)
Gene ID: Rep_2208_c_0_53
Type: pfam
Location: 65645 - 66175 (+)
Gene ID: Rep_2208_c_0_54
Type: CAZyme
Location: 66182 - 68188 (+)
Gene ID: Rep_2208_c_0_55
Type:
Location: 68203 - 69333 (+)
Gene ID: Rep_2208_c_0_56
Type:
Location: 69327 - 70061 (+)
Gene ID: Rep_2208_c_0_57
Type: TC
Location: 70069 - 71529 (+)
Gene ID: Rep_2208_c_0_58
Type:
Location: 71498 - 72799 (+)
Gene ID: Rep_2208_c_0_59
Type: CAZyme
Location: 72814 - 73569 (+)
Gene ID: Rep_2208_c_0_60
Type:
Location: 73566 - 73676 (+)
Gene ID: Rep_2208_c_0_61
Type: CAZyme
Location: 73698 - 74942 (+)
Gene ID: Rep_2208_c_0_62
Type: pfam
Location: 74961 - 76067 (+)
Gene ID: Rep_2208_c_0_63
Type: CAZyme
Location: 76086 - 76955 (+)
Gene ID: Rep_2208_c_0_64
Type: TC
Location: 76979 - 78757 (+)
Gene ID: Rep_2208_c_0_65
Type: CAZyme
Location: 78747 - 79748 (+)
Gene ID: Rep_2208_c_0_66
Type:
Location: 79872 - 81008 (+)
Gene ID: Rep_2208_c_0_67
Type: CAZyme
Location: 81008 - 82078 (+)
Gene ID: Rep_2208_c_0_68
Type: pfam
Location: 82075 - 82647 (+)
Gene ID: Rep_2208_c_0_69
Type: STP
Location: 82629 - 83759 (+)
Gene ID: Rep_2208_c_0_70
Type: CAZyme
Location: 83772 - 85031 (+)
Gene ID: Rep_2208_c_0_71
Type: CAZyme
Location: 85031 - 85783 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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