Cluster: Rep_2208_CGC29
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2208
- CGC Family ID: CGCFAM_00257
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2208_c_16 | Rep_2208_c_16_12 | 17264 | 18169 | + | 3.A.1.3.27 |
| NULL(UNKNOWN) | Rep_2208_c_16 | Rep_2208_c_16_13 | 18227 | 18421 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_2208_c_16 | Rep_2208_c_16_14 | 18406 | 19107 | + | 3.A.1.3.15 |
| TC | Rep_2208_c_16 | Rep_2208_c_16_15 | 19094 | 19816 | + | 3.A.1.3.25 |
| CAZyme | Rep_2208_c_16 | Rep_2208_c_16_16 | 19931 | 20947 | + | GT2 |
Gene ID: Rep_2208_c_16_12
Type: TC
Location: 17264 - 18169 (+)
Type: TC
Location: 17264 - 18169 (+)
Gene ID: Rep_2208_c_16_13
Type:
Location: 18227 - 18421 (+)
Type:
Location: 18227 - 18421 (+)
Gene ID: Rep_2208_c_16_14
Type: TC
Location: 18406 - 19107 (+)
Type: TC
Location: 18406 - 19107 (+)
Gene ID: Rep_2208_c_16_15
Type: TC
Location: 19094 - 19816 (+)
Type: TC
Location: 19094 - 19816 (+)
Gene ID: Rep_2208_c_16_16
Type: CAZyme
Location: 19931 - 20947 (+)
Type: CAZyme
Location: 19931 - 20947 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Suilimivivens
Species
Suilimivivens sp000438155
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2208_c_16_12 | vegetarian > omnivore | 1.54745 | 0.00588 |
| Rep_2208_c_16_12 | vegetarian > vegan | 1.92680 | 0.00052 |
| Rep_2208_c_16_13 | vegetarian > omnivore | 2.13551 | 0.00588 |
| Rep_2208_c_16_13 | vegetarian > vegan | 2.56204 | 0.00052 |
| Rep_2208_c_16_16 | vegetarian > vegan | 1.61675 | 0.00052 |