Cluster: Rep_2208_CGC27
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_2208
- CGC Family ID: CGCFAM_02276
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2208_c_15 | Rep_2208_c_15_12 | 16309 | 18696 | + | GH31_4 |
| CAZyme | Rep_2208_c_15 | Rep_2208_c_15_13 | 18781 | 21252 | + | GH2 |
| NULL(UNKNOWN) | Rep_2208_c_15 | Rep_2208_c_15_14 | 21436 | 23061 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_2208_c_15 | Rep_2208_c_15_15 | 23078 | 25429 | + | GH95 |
| CAZyme | Rep_2208_c_15 | Rep_2208_c_15_16 | 25462 | 27771 | + | GH95 |
| TF | Rep_2208_c_15 | Rep_2208_c_15_17 | 27808 | 30123 | + | HTH_AraC |
| TC | Rep_2208_c_15 | Rep_2208_c_15_18 | 30542 | 31498 | + | 3.A.1.1.3 |
| TC | Rep_2208_c_15 | Rep_2208_c_15_19 | 31533 | 32423 | + | 3.A.1.1.10 |
Gene ID: Rep_2208_c_15_12
Type: CAZyme
Location: 16309 - 18696 (+)
Type: CAZyme
Location: 16309 - 18696 (+)
Gene ID: Rep_2208_c_15_13
Type: CAZyme
Location: 18781 - 21252 (+)
Type: CAZyme
Location: 18781 - 21252 (+)
Gene ID: Rep_2208_c_15_14
Type:
Location: 21436 - 23061 (+)
Type:
Location: 21436 - 23061 (+)
Gene ID: Rep_2208_c_15_15
Type: CAZyme
Location: 23078 - 25429 (+)
Type: CAZyme
Location: 23078 - 25429 (+)
Gene ID: Rep_2208_c_15_16
Type: CAZyme
Location: 25462 - 27771 (+)
Type: CAZyme
Location: 25462 - 27771 (+)
Gene ID: Rep_2208_c_15_17
Type: TF
Location: 27808 - 30123 (+)
Type: TF
Location: 27808 - 30123 (+)
Gene ID: Rep_2208_c_15_18
Type: TC
Location: 30542 - 31498 (+)
Type: TC
Location: 30542 - 31498 (+)
Gene ID: Rep_2208_c_15_19
Type: TC
Location: 31533 - 32423 (+)
Type: TC
Location: 31533 - 32423 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Suilimivivens
Species
Suilimivivens sp000438155
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2208_c_15_12 | vegetarian > vegan | 2.21787 | 0.00052 |
| Rep_2208_c_15_13 | vegetarian > omnivore | 1.01081 | 0.00588 |
| Rep_2208_c_15_13 | vegetarian > vegan | 1.92629 | 0.00052 |
| Rep_2208_c_15_14 | vegetarian > omnivore | 1.97939 | 0.00436 |
| Rep_2208_c_15_14 | vegetarian > vegan | 3.38791 | 0.00052 |
| Rep_2208_c_15_15 | vegetarian > vegan | 1.61242 | 0.00052 |
| Rep_2208_c_15_15 | vegetarian > omnivore | 1.09907 | 0.00588 |
| Rep_2208_c_15_16 | vegetarian > vegan | 2.54461 | 0.00052 |
| Rep_2208_c_15_16 | vegetarian > omnivore | 1.69399 | 0.00588 |
| Rep_2208_c_15_17 | vegetarian > vegan | 2.59837 | 0.00052 |
| Rep_2208_c_15_17 | vegetarian > omnivore | 1.96634 | 0.00588 |
| Rep_2208_c_15_18 | vegetarian > vegan | 1.38281 | 0.00052 |
| Rep_2208_c_15_19 | vegetarian > vegan | 2.72906 | 0.00052 |
| Rep_2208_c_15_19 | vegetarian > omnivore | 1.26717 | 0.00588 |