Cluster: Rep_2208_CGC26
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2208
- CGC Family ID: CGCFAM_03229
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2208_c_14 | Rep_2208_c_14_57 | 59802 | 64211 | - | 3.A.7.17.1 |
| NULL(UNKNOWN) | Rep_2208_c_14 | Rep_2208_c_14_58 | 64609 | 65319 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_2208_c_14 | Rep_2208_c_14_59 | 65496 | 66755 | + | GH10 |
| pfam | Rep_2208_c_14 | Rep_2208_c_14_60 | 66695 | 67318 | - | Hydrolase | HAD_2 |
| CAZyme | Rep_2208_c_14 | Rep_2208_c_14_61 | 67389 | 68027 | - | CE4 |
| TC | Rep_2208_c_14 | Rep_2208_c_14_62 | 68152 | 69531 | - | 2.A.66.1.47 |
Gene ID: Rep_2208_c_14_57
Type: TC
Location: 59802 - 64211 (-)
Type: TC
Location: 59802 - 64211 (-)
Gene ID: Rep_2208_c_14_58
Type:
Location: 64609 - 65319 (-)
Type:
Location: 64609 - 65319 (-)
Gene ID: Rep_2208_c_14_59
Type: CAZyme
Location: 65496 - 66755 (+)
Type: CAZyme
Location: 65496 - 66755 (+)
Gene ID: Rep_2208_c_14_60
Type: pfam
Location: 66695 - 67318 (-)
Type: pfam
Location: 66695 - 67318 (-)
Gene ID: Rep_2208_c_14_61
Type: CAZyme
Location: 67389 - 68027 (-)
Type: CAZyme
Location: 67389 - 68027 (-)
Gene ID: Rep_2208_c_14_62
Type: TC
Location: 68152 - 69531 (-)
Type: TC
Location: 68152 - 69531 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Suilimivivens
Species
Suilimivivens sp000438155
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2208_c_14_57 | vegetarian > vegan | 1.47336 | 0.00052 |
| Rep_2208_c_14_58 | vegetarian > vegan | 1.29403 | 0.00052 |
| Rep_2208_c_14_59 | vegetarian > omnivore | 1.18778 | 0.00588 |
| Rep_2208_c_14_59 | vegetarian > vegan | 1.46370 | 0.00052 |
| Rep_2208_c_14_60 | vegetarian > omnivore | 1.22005 | 0.00588 |
| Rep_2208_c_14_60 | vegetarian > vegan | 2.19394 | 0.00052 |
| Rep_2208_c_14_61 | vegetarian > omnivore | 1.59785 | 0.00588 |
| Rep_2208_c_14_61 | vegetarian > vegan | 2.23197 | 0.00052 |
| Rep_2208_c_14_62 | vegetarian > vegan | 3.29571 | 0.00052 |