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Cluster: Rep_2208_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2208_c_11 Rep_2208_c_11_34 38441 39088 - 2.A.38.4.4
TC Rep_2208_c_11 Rep_2208_c_11_35 39108 40448 - 2.A.38.4.1
TF Rep_2208_c_11 Rep_2208_c_11_36 40835 41548 + LytTR
TC Rep_2208_c_11 Rep_2208_c_11_37 41613 42335 + 9.B.14.1.13
TC Rep_2208_c_11 Rep_2208_c_11_38 42553 44421 + 3.A.1.111.2
TC Rep_2208_c_11 Rep_2208_c_11_39 44418 46292 + 3.A.1.111.2
NULL(UNKNOWN) Rep_2208_c_11 Rep_2208_c_11_40 46519 46683 + NULL(UNKNOWN)
[View Structural Homologs]
TF Rep_2208_c_11 Rep_2208_c_11_41 46700 47854 + GntR
CAZyme Rep_2208_c_11 Rep_2208_c_11_42 47898 49397 - GH51_1
TF Rep_2208_c_11 Rep_2208_c_11_43 49537 50379 + HTH_AraC
TF Rep_2208_c_11 Rep_2208_c_11_44 50376 51485 + HTH_AraC | HTH_AraC
TC Rep_2208_c_11 Rep_2208_c_11_45 51482 52978 + 8.A.59.2.1
TC Rep_2208_c_11 Rep_2208_c_11_46 53129 54178 + 3.A.1.2.1
TC Rep_2208_c_11 Rep_2208_c_11_47 54371 55888 + 3.A.1.2.23
TC Rep_2208_c_11 Rep_2208_c_11_48 55885 56946 + 3.A.1.2.14
TC Rep_2208_c_11 Rep_2208_c_11_49 56948 57973 + 3.A.1.2.14
TC Rep_2208_c_11 Rep_2208_c_11_50 58142 59833 + 1.B.52.2.2
TC Rep_2208_c_11 Rep_2208_c_11_51 59846 60937 + 3.A.1.2.25
TF Rep_2208_c_11 Rep_2208_c_11_52 61053 61910 + HTH_AraC
CAZyme Rep_2208_c_11 Rep_2208_c_11_53 62090 64018 + GH127
TF Rep_2208_c_11 Rep_2208_c_11_54 64086 64979 - HTH_AraC | HTH_AraC
STP Rep_2208_c_11 Rep_2208_c_11_55 65349 67001 + SBP_bac_1
TC Rep_2208_c_11 Rep_2208_c_11_56 67064 67999 + 3.A.1.1.10
TC Rep_2208_c_11 Rep_2208_c_11_57 68013 68900 + 3.A.1.1.10
CAZyme Rep_2208_c_11 Rep_2208_c_11_58 68990 70018 + GH130
Gene ID: Rep_2208_c_11_34
Type: TC
Location: 38441 - 39088 (-)
Gene ID: Rep_2208_c_11_35
Type: TC
Location: 39108 - 40448 (-)
Gene ID: Rep_2208_c_11_36
Type: TF
Location: 40835 - 41548 (+)
Gene ID: Rep_2208_c_11_37
Type: TC
Location: 41613 - 42335 (+)
Gene ID: Rep_2208_c_11_38
Type: TC
Location: 42553 - 44421 (+)
Gene ID: Rep_2208_c_11_39
Type: TC
Location: 44418 - 46292 (+)
Gene ID: Rep_2208_c_11_40
Type:
Location: 46519 - 46683 (+)
Gene ID: Rep_2208_c_11_41
Type: TF
Location: 46700 - 47854 (+)
Gene ID: Rep_2208_c_11_42
Type: CAZyme
Location: 47898 - 49397 (-)
Gene ID: Rep_2208_c_11_43
Type: TF
Location: 49537 - 50379 (+)
Gene ID: Rep_2208_c_11_44
Type: TF
Location: 50376 - 51485 (+)
Gene ID: Rep_2208_c_11_45
Type: TC
Location: 51482 - 52978 (+)
Gene ID: Rep_2208_c_11_46
Type: TC
Location: 53129 - 54178 (+)
Gene ID: Rep_2208_c_11_47
Type: TC
Location: 54371 - 55888 (+)
Gene ID: Rep_2208_c_11_48
Type: TC
Location: 55885 - 56946 (+)
Gene ID: Rep_2208_c_11_49
Type: TC
Location: 56948 - 57973 (+)
Gene ID: Rep_2208_c_11_50
Type: TC
Location: 58142 - 59833 (+)
Gene ID: Rep_2208_c_11_51
Type: TC
Location: 59846 - 60937 (+)
Gene ID: Rep_2208_c_11_52
Type: TF
Location: 61053 - 61910 (+)
Gene ID: Rep_2208_c_11_53
Type: CAZyme
Location: 62090 - 64018 (+)
Gene ID: Rep_2208_c_11_54
Type: TF
Location: 64086 - 64979 (-)
Gene ID: Rep_2208_c_11_55
Type: STP
Location: 65349 - 67001 (+)
Gene ID: Rep_2208_c_11_56
Type: TC
Location: 67064 - 67999 (+)
Gene ID: Rep_2208_c_11_57
Type: TC
Location: 68013 - 68900 (+)
Gene ID: Rep_2208_c_11_58
Type: CAZyme
Location: 68990 - 70018 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2208_c_11_37 vegetarian > omnivore 3.47136 0.00436
Rep_2208_c_11_37 vegetarian > vegan 3.93468 0.00052
Rep_2208_c_11_38 vegetarian > omnivore 16.02277 0.00082
Rep_2208_c_11_38 vegetarian > vegan 3.39027 0.00052
Rep_2208_c_11_39 vegetarian > omnivore 3.15675 0.00436
Rep_2208_c_11_39 vegetarian > vegan 4.30563 0.00052
Rep_2208_c_11_40 vegetarian > vegan 1.84886 0.00052
Rep_2208_c_11_44 vegetarian > vegan 1.41039 0.00052
Rep_2208_c_11_50 vegetarian > vegan 1.30548 0.00052
Rep_2208_c_11_51 vegetarian > omnivore 1.02464 0.00588

🧭 Explore Read Mapping of CGC

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