Cluster: Rep_2208_CGC20
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2208
- CGC Family ID: CGCFAM_00327
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2208_c_7 | Rep_2208_c_7_48 | 55223 | 59455 | + | 2.A.6.3.6 |
| NULL(UNKNOWN) | Rep_2208_c_7 | Rep_2208_c_7_49 | 59731 | 60462 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_2208_c_7 | Rep_2208_c_7_50 | 60654 | 63401 | - | GT51 |
| pfam | Rep_2208_c_7 | Rep_2208_c_7_51 | 63597 | 64256 | + | UPF0029 | DUF1949 |
| TC | Rep_2208_c_7 | Rep_2208_c_7_52 | 64424 | 65773 | + | 1.A.26.1.2 |
Gene ID: Rep_2208_c_7_48
Type: TC
Location: 55223 - 59455 (+)
Type: TC
Location: 55223 - 59455 (+)
Gene ID: Rep_2208_c_7_49
Type:
Location: 59731 - 60462 (+)
Type:
Location: 59731 - 60462 (+)
Gene ID: Rep_2208_c_7_50
Type: CAZyme
Location: 60654 - 63401 (-)
Type: CAZyme
Location: 60654 - 63401 (-)
Gene ID: Rep_2208_c_7_51
Type: pfam
Location: 63597 - 64256 (+)
Type: pfam
Location: 63597 - 64256 (+)
Gene ID: Rep_2208_c_7_52
Type: TC
Location: 64424 - 65773 (+)
Type: TC
Location: 64424 - 65773 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Suilimivivens
Species
Suilimivivens sp000438155
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2208_c_7_48 | vegetarian > omnivore | 1.26265 | 0.00588 |
| Rep_2208_c_7_48 | vegetarian > vegan | 1.65285 | 0.00052 |
| Rep_2208_c_7_49 | vegetarian > omnivore | 1.07957 | 0.00588 |
| Rep_2208_c_7_49 | vegetarian > vegan | 1.91465 | 0.00052 |
| Rep_2208_c_7_50 | vegetarian > vegan | 1.23973 | 0.00052 |
| Rep_2208_c_7_51 | vegetarian > omnivore | 1.84053 | 0.00588 |
| Rep_2208_c_7_51 | vegetarian > vegan | 1.74579 | 0.00052 |