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Cluster: Rep_2208_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2208_c_0 Rep_2208_c_0_31 40032 41567 + 2.A.50.2.1
CAZyme Rep_2208_c_0 Rep_2208_c_0_32 41578 42534 + GT11
CAZyme Rep_2208_c_0 Rep_2208_c_0_33 42550 43458 + GT11
CAZyme Rep_2208_c_0 Rep_2208_c_0_34 43455 44462 + GT2
TC Rep_2208_c_0 Rep_2208_c_0_35 44507 46306 + 3.A.1.106.15
pfam Rep_2208_c_0 Rep_2208_c_0_36 46320 47063 + DUF5672
CAZyme Rep_2208_c_0 Rep_2208_c_0_37 47069 48001 + GT17
TC Rep_2208_c_0 Rep_2208_c_0_38 48061 49431 + 9.B.18.1.2
CAZyme Rep_2208_c_0 Rep_2208_c_0_39 49431 50480 + GT4
CAZyme Rep_2208_c_0 Rep_2208_c_0_40 50578 51633 + GT2
CAZyme Rep_2208_c_0 Rep_2208_c_0_41 51725 52720 + GT2
pfam Rep_2208_c_0 Rep_2208_c_0_42 52856 54196 + PS_pyruv_trans
TC Rep_2208_c_0 Rep_2208_c_0_43 54139 55662 + 2.A.66.1.40
CAZyme Rep_2208_c_0 Rep_2208_c_0_44 55674 56723 + GH105
CAZyme Rep_2208_c_0 Rep_2208_c_0_45 56884 57885 + GT11
Gene ID: Rep_2208_c_0_31
Type: TC
Location: 40032 - 41567 (+)
Gene ID: Rep_2208_c_0_32
Type: CAZyme
Location: 41578 - 42534 (+)
Gene ID: Rep_2208_c_0_33
Type: CAZyme
Location: 42550 - 43458 (+)
Gene ID: Rep_2208_c_0_34
Type: CAZyme
Location: 43455 - 44462 (+)
Gene ID: Rep_2208_c_0_35
Type: TC
Location: 44507 - 46306 (+)
Gene ID: Rep_2208_c_0_36
Type: pfam
Location: 46320 - 47063 (+)
Gene ID: Rep_2208_c_0_37
Type: CAZyme
Location: 47069 - 48001 (+)
Gene ID: Rep_2208_c_0_38
Type: TC
Location: 48061 - 49431 (+)
Gene ID: Rep_2208_c_0_39
Type: CAZyme
Location: 49431 - 50480 (+)
Gene ID: Rep_2208_c_0_40
Type: CAZyme
Location: 50578 - 51633 (+)
Gene ID: Rep_2208_c_0_41
Type: CAZyme
Location: 51725 - 52720 (+)
Gene ID: Rep_2208_c_0_42
Type: pfam
Location: 52856 - 54196 (+)
Gene ID: Rep_2208_c_0_43
Type: TC
Location: 54139 - 55662 (+)
Gene ID: Rep_2208_c_0_44
Type: CAZyme
Location: 55674 - 56723 (+)
Gene ID: Rep_2208_c_0_45
Type: CAZyme
Location: 56884 - 57885 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2208_c_0_31 vegetarian > omnivore 1.39465 0.00588
Rep_2208_c_0_31 vegetarian > vegan 2.03578 0.00052
Rep_2208_c_0_32 vegetarian > omnivore 1.11906 0.00588
Rep_2208_c_0_32 vegetarian > vegan 1.94497 0.00052
Rep_2208_c_0_33 vegetarian > omnivore 1.41964 0.00588
Rep_2208_c_0_33 vegetarian > vegan 1.69845 0.00052
Rep_2208_c_0_34 vegetarian > omnivore 1.09268 0.00588
Rep_2208_c_0_35 vegetarian > omnivore 1.20298 0.00588
Rep_2208_c_0_36 vegetarian > omnivore 3.43803 0.00588
Rep_2208_c_0_36 vegetarian > vegan 1.84923 0.00052
Rep_2208_c_0_38 vegetarian > vegan 1.20291 0.00052
Rep_2208_c_0_39 vegetarian > vegan 2.00258 0.00052
Rep_2208_c_0_40 vegetarian > vegan 1.80290 0.00052
Rep_2208_c_0_41 vegetarian > vegan 1.32555 0.00052
Rep_2208_c_0_44 vegetarian > vegan 2.08793 0.00052

🧭 Explore Read Mapping of CGC

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