Cluster: Rep_2208_CGC19
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2208
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2208_c_7 | Rep_2208_c_7_2 | 2630 | 3949 | + | GH3 |
| pfam | Rep_2208_c_7 | Rep_2208_c_7_3 | 4778 | 5248 | + | LOR |
| TC | Rep_2208_c_7 | Rep_2208_c_7_4 | 5272 | 6618 | - | 2.A.66.1.23 |
| pfam | Rep_2208_c_7 | Rep_2208_c_7_5 | 6979 | 7272 | + | FakA-like_M |
| pfam | Rep_2208_c_7 | Rep_2208_c_7_6 | 7333 | 8301 | - | PIN7 |
| CAZyme | Rep_2208_c_7 | Rep_2208_c_7_7 | 8601 | 10667 | + | GH42 |
Gene ID: Rep_2208_c_7_2
Type: CAZyme
Location: 2630 - 3949 (+)
Type: CAZyme
Location: 2630 - 3949 (+)
Gene ID: Rep_2208_c_7_3
Type: pfam
Location: 4778 - 5248 (+)
Type: pfam
Location: 4778 - 5248 (+)
Gene ID: Rep_2208_c_7_4
Type: TC
Location: 5272 - 6618 (-)
Type: TC
Location: 5272 - 6618 (-)
Gene ID: Rep_2208_c_7_5
Type: pfam
Location: 6979 - 7272 (+)
Type: pfam
Location: 6979 - 7272 (+)
Gene ID: Rep_2208_c_7_6
Type: pfam
Location: 7333 - 8301 (-)
Type: pfam
Location: 7333 - 8301 (-)
Gene ID: Rep_2208_c_7_7
Type: CAZyme
Location: 8601 - 10667 (+)
Type: CAZyme
Location: 8601 - 10667 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Suilimivivens
Species
Suilimivivens sp000438155
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2208_c_7_2 | vegetarian > omnivore | 1.45704 | 0.00588 |
| Rep_2208_c_7_2 | vegetarian > vegan | 1.81255 | 0.00052 |
| Rep_2208_c_7_7 | vegetarian > omnivore | 1.69188 | 0.00588 |
| Rep_2208_c_7_7 | vegetarian > vegan | 1.65479 | 0.00052 |