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Cluster: Rep_2208_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2208_c_5 Rep_2208_c_5_47 47785 50091 - GH1
TC Rep_2208_c_5 Rep_2208_c_5_48 50146 52368 - 1.B.52.2.2
CAZyme Rep_2208_c_5 Rep_2208_c_5_49 52386 53513 - CBM35inCE17 | CE17
CAZyme Rep_2208_c_5 Rep_2208_c_5_50 53617 54639 - GH130_2
CAZyme Rep_2208_c_5 Rep_2208_c_5_51 54752 55924 - GH130_1
pfam Rep_2208_c_5 Rep_2208_c_5_52 55927 57114 - GlcNAc_2-epim
TC Rep_2208_c_5 Rep_2208_c_5_53 57142 57990 - 3.A.1.1.27
TC Rep_2208_c_5 Rep_2208_c_5_54 57992 58996 - 3.A.1.1.28
Gene ID: Rep_2208_c_5_47
Type: CAZyme
Location: 47785 - 50091 (-)
Gene ID: Rep_2208_c_5_48
Type: TC
Location: 50146 - 52368 (-)
Gene ID: Rep_2208_c_5_49
Type: CAZyme
Location: 52386 - 53513 (-)
Gene ID: Rep_2208_c_5_50
Type: CAZyme
Location: 53617 - 54639 (-)
Gene ID: Rep_2208_c_5_51
Type: CAZyme
Location: 54752 - 55924 (-)
Gene ID: Rep_2208_c_5_52
Type: pfam
Location: 55927 - 57114 (-)
Gene ID: Rep_2208_c_5_53
Type: TC
Location: 57142 - 57990 (-)
Gene ID: Rep_2208_c_5_54
Type: TC
Location: 57992 - 58996 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2208_c_5_47 vegetarian > vegan 1.08977 0.00052
Rep_2208_c_5_53 vegetarian > vegan 1.31808 0.00052

🧭 Explore Read Mapping of CGC

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