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Cluster: Rep_2208_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2208_c_4 Rep_2208_c_4_52 58546 59688 + GH109
STP Rep_2208_c_4 Rep_2208_c_4_53 59714 61063 + SBP_bac_1
TC Rep_2208_c_4 Rep_2208_c_4_54 61132 62022 + 3.A.1.1.7
TC Rep_2208_c_4 Rep_2208_c_4_55 62027 62863 + 3.A.1.1.47
pfam Rep_2208_c_4 Rep_2208_c_4_56 62886 63830 + AP_endonuc_2
pfam Rep_2208_c_4 Rep_2208_c_4_57 63847 64821 + AP_endonuc_2
TC Rep_2208_c_4 Rep_2208_c_4_58 65218 65940 + 3.A.1.25.6
pfam Rep_2208_c_4 Rep_2208_c_4_59 65992 66918 + SUFBD_core
TC Rep_2208_c_4 Rep_2208_c_4_60 66970 68805 + 3.A.1.135.5
TC Rep_2208_c_4 Rep_2208_c_4_61 68808 70604 + 3.A.1.135.5
TF Rep_2208_c_4 Rep_2208_c_4_62 70591 71376 - HTH_AraC
CAZyme Rep_2208_c_4 Rep_2208_c_4_63 71408 72535 - CE2
TC Rep_2208_c_4 Rep_2208_c_4_64 73070 74827 + 3.A.1.106.3
TC Rep_2208_c_4 Rep_2208_c_4_65 74832 76616 + 3.A.1.106.3
CAZyme Rep_2208_c_4 Rep_2208_c_4_66 76697 78208 + GH51_1
Gene ID: Rep_2208_c_4_52
Type: CAZyme
Location: 58546 - 59688 (+)
Gene ID: Rep_2208_c_4_53
Type: STP
Location: 59714 - 61063 (+)
Gene ID: Rep_2208_c_4_54
Type: TC
Location: 61132 - 62022 (+)
Gene ID: Rep_2208_c_4_55
Type: TC
Location: 62027 - 62863 (+)
Gene ID: Rep_2208_c_4_56
Type: pfam
Location: 62886 - 63830 (+)
Gene ID: Rep_2208_c_4_57
Type: pfam
Location: 63847 - 64821 (+)
Gene ID: Rep_2208_c_4_58
Type: TC
Location: 65218 - 65940 (+)
Gene ID: Rep_2208_c_4_59
Type: pfam
Location: 65992 - 66918 (+)
Gene ID: Rep_2208_c_4_60
Type: TC
Location: 66970 - 68805 (+)
Gene ID: Rep_2208_c_4_61
Type: TC
Location: 68808 - 70604 (+)
Gene ID: Rep_2208_c_4_62
Type: TF
Location: 70591 - 71376 (-)
Gene ID: Rep_2208_c_4_63
Type: CAZyme
Location: 71408 - 72535 (-)
Gene ID: Rep_2208_c_4_64
Type: TC
Location: 73070 - 74827 (+)
Gene ID: Rep_2208_c_4_65
Type: TC
Location: 74832 - 76616 (+)
Gene ID: Rep_2208_c_4_66
Type: CAZyme
Location: 76697 - 78208 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2208_c_4_52 vegetarian > omnivore 1.25237 0.00588
Rep_2208_c_4_53 vegetarian > omnivore 1.14927 0.00588
Rep_2208_c_4_53 vegetarian > vegan 1.26384 0.00052
Rep_2208_c_4_55 vegetarian > omnivore 2.00408 0.00588
Rep_2208_c_4_55 vegetarian > vegan 1.05136 0.00052
Rep_2208_c_4_56 vegetarian > omnivore 2.43185 0.00588
Rep_2208_c_4_57 vegetarian > omnivore 2.43499 0.00588
Rep_2208_c_4_57 vegetarian > vegan 1.95173 0.00052
Rep_2208_c_4_60 vegetarian > vegan 1.06350 0.00052
Rep_2208_c_4_62 vegetarian > omnivore 1.45402 0.00588
Rep_2208_c_4_62 vegetarian > vegan 1.80421 0.00052
Rep_2208_c_4_63 vegetarian > omnivore 1.52877 0.00588

🧭 Explore Read Mapping of CGC

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