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Cluster: Rep_2208_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2208_c_4 Rep_2208_c_4_17 15100 16941 + 3.A.16.1.1
TF Rep_2208_c_4 Rep_2208_c_4_18 17025 18047 - LacI
STP Rep_2208_c_4 Rep_2208_c_4_19 18392 19855 + SBP_bac_1
TC Rep_2208_c_4 Rep_2208_c_4_20 19896 20783 + 3.A.1.1.36
TC Rep_2208_c_4 Rep_2208_c_4_21 20796 21620 + 3.A.1.1.20
CAZyme Rep_2208_c_4 Rep_2208_c_4_22 21643 23244 + GH172
CAZyme Rep_2208_c_4 Rep_2208_c_4_23 23258 24718 + GH32
STP Rep_2208_c_4 Rep_2208_c_4_24 24721 25683 + PfkB
CAZyme Rep_2208_c_4 Rep_2208_c_4_25 26090 28192 + GH13_39
TC Rep_2208_c_4 Rep_2208_c_4_26 28222 30054 + 9.B.33.1.1
TF Rep_2208_c_4 Rep_2208_c_4_27 30029 30751 + HTH_AraC | HTH_AraC
TC Rep_2208_c_4 Rep_2208_c_4_28 30892 32244 + 3.A.1.1.16
TC Rep_2208_c_4 Rep_2208_c_4_29 32317 33195 + 3.A.1.1.20
TC Rep_2208_c_4 Rep_2208_c_4_30 33192 34022 + 3.A.1.1.39
CAZyme Rep_2208_c_4 Rep_2208_c_4_31 34027 35916 + GH127
CAZyme Rep_2208_c_4 Rep_2208_c_4_32 35924 37801 + GH127
Gene ID: Rep_2208_c_4_17
Type: TC
Location: 15100 - 16941 (+)
Gene ID: Rep_2208_c_4_18
Type: TF
Location: 17025 - 18047 (-)
Gene ID: Rep_2208_c_4_19
Type: STP
Location: 18392 - 19855 (+)
Gene ID: Rep_2208_c_4_20
Type: TC
Location: 19896 - 20783 (+)
Gene ID: Rep_2208_c_4_21
Type: TC
Location: 20796 - 21620 (+)
Gene ID: Rep_2208_c_4_22
Type: CAZyme
Location: 21643 - 23244 (+)
Gene ID: Rep_2208_c_4_23
Type: CAZyme
Location: 23258 - 24718 (+)
Gene ID: Rep_2208_c_4_24
Type: STP
Location: 24721 - 25683 (+)
Gene ID: Rep_2208_c_4_25
Type: CAZyme
Location: 26090 - 28192 (+)
Gene ID: Rep_2208_c_4_26
Type: TC
Location: 28222 - 30054 (+)
Gene ID: Rep_2208_c_4_27
Type: TF
Location: 30029 - 30751 (+)
Gene ID: Rep_2208_c_4_28
Type: TC
Location: 30892 - 32244 (+)
Gene ID: Rep_2208_c_4_29
Type: TC
Location: 32317 - 33195 (+)
Gene ID: Rep_2208_c_4_30
Type: TC
Location: 33192 - 34022 (+)
Gene ID: Rep_2208_c_4_31
Type: CAZyme
Location: 34027 - 35916 (+)
Gene ID: Rep_2208_c_4_32
Type: CAZyme
Location: 35924 - 37801 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2208_c_4_18 vegetarian > vegan 2.60011 0.00052
Rep_2208_c_4_19 vegetarian > vegan 1.06250 0.00052
Rep_2208_c_4_20 vegetarian > vegan 1.19037 0.00052
Rep_2208_c_4_21 vegetarian > omnivore 1.09828 0.00588
Rep_2208_c_4_21 vegetarian > vegan 1.91214 0.00052
Rep_2208_c_4_22 vegetarian > omnivore 1.28256 0.00588
Rep_2208_c_4_22 vegetarian > vegan 2.20631 0.00052
Rep_2208_c_4_23 vegetarian > vegan 4.72033 0.00052
Rep_2208_c_4_24 vegetarian > vegan 2.40216 0.00052
Rep_2208_c_4_24 vegetarian > omnivore 1.37703 0.00588
Rep_2208_c_4_26 vegetarian > vegan 1.89606 0.00052
Rep_2208_c_4_27 vegetarian > vegan 1.68755 0.00052
Rep_2208_c_4_29 vegetarian > vegan 1.31449 0.00052
Rep_2208_c_4_30 vegetarian > vegan 1.67538 0.00052
Rep_2208_c_4_31 vegetarian > vegan 2.51042 0.00052
Rep_2208_c_4_32 vegetarian > vegan 2.03494 0.00052

🧭 Explore Read Mapping of CGC

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