Cluster: Rep_2208_CGC12
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2208
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2208_c_2 | Rep_2208_c_2_130 | 125329 | 126084 | + | 3.A.1.17.8 |
| TC | Rep_2208_c_2 | Rep_2208_c_2_131 | 126074 | 126880 | + | 3.A.1.17.4 |
| TC | Rep_2208_c_2 | Rep_2208_c_2_132 | 127105 | 127977 | - | 1.A.23.2.1 |
| CAZyme | Rep_2208_c_2 | Rep_2208_c_2_133 | 128011 | 130503 | - | CBM48 | GH13_9 |
Gene ID: Rep_2208_c_2_130
Type: TC
Location: 125329 - 126084 (+)
Type: TC
Location: 125329 - 126084 (+)
Gene ID: Rep_2208_c_2_131
Type: TC
Location: 126074 - 126880 (+)
Type: TC
Location: 126074 - 126880 (+)
Gene ID: Rep_2208_c_2_132
Type: TC
Location: 127105 - 127977 (-)
Type: TC
Location: 127105 - 127977 (-)
Gene ID: Rep_2208_c_2_133
Type: CAZyme
Location: 128011 - 130503 (-)
Type: CAZyme
Location: 128011 - 130503 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Suilimivivens
Species
Suilimivivens sp000438155
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2208_c_2_130 | vegetarian > omnivore | 1.15954 | 0.00588 |
| Rep_2208_c_2_130 | vegetarian > vegan | 2.86251 | 0.00052 |
| Rep_2208_c_2_131 | vegetarian > vegan | 2.70696 | 0.00052 |
| Rep_2208_c_2_132 | vegetarian > omnivore | 1.73219 | 0.00588 |
| Rep_2208_c_2_132 | vegetarian > vegan | 1.61613 | 0.00052 |